Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02829 ATGGAGGAACAAATACCATTTAAGAATCTCCATAGCAGAGAGTATTCAGGTCACAAGAAGAAGCTTCCTTTCTCTTCGATGGTAAACACGTTCAAAGTTCAAAACTTTTTGCGCTATGTCAAGGTTCACTCTGTGGCCTGGAATTGCATTGGTACAAAACTTGCTTCTGGTTCTGTGGATCAAACTGCTCGAATCTGGCATATTGAGCCACATGGGCATGGTAAAGTCAAAGATATTGAATTGAAGGGTCACACTGATAGTGTGGATCAGCTATGCTGGGACCCCAAACACGCTGATCTGATTGCAACTGCATCGGGTGATAAGACTGTTCGTTTGTGGGATGCTCGTAATGGAAAATGCTCACAACAGGCCGAACTTAGTGGGGAGAATATCAACATCACCTACAAACCTGATGGGACTCATGTAGCTGTAGGTAATAGGGATGATGAATTAACAATACTGGATGTTCGGAAGTTCAAACCAATTCATAGGCGCAAGTTCAATTATGAGGTAAATGAAATTGCTTGGAACATGACTGGCGAGATGTTCTTTCTAACAACTGGAAATGGGACTGTGGAAGTACTGTCTTACCCATCTCTTCGACCTCTTGATACCCTCATGGCCCATACAGCTGGTTGTTATTGTATTGCAATTGACCCAATAGGAAGATATTTTGCTGTTGGAAGTGCTGATTCCCTTGTCAGCCTGTGGGATATCTCAGAGATGCTCTGTGTGCGTACCTTCACAAAGCTGGAATGGCCTGTCCGGACAATTAGTTTCAATTATACTGGGGATCTTATTGCGTCAGCAAGTGAGGACTTGTTCATTGATATTTCTAATGTTCACACTGGACGAACAGTGCATCAGATTCCTTGTAGGGCTGCTATGAACAGCGTTGAGTGGAATCCTAAATACAATTTACTTGCATATGCTGGTGATGACAAAAACAAGTATCAGGCTGATGAAGGTGTTTTTCGAATTTTTGGTTTTGAAAATGCTTAG 1002 0.4232 MEEQIPFKNLHSREYSGHKKKLPFSSMVNTFKVQNFLRYVKVHSVAWNCIGTKLASGSVDQTARIWHIEPHGHGKVKDIELKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHRRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLSYPSLRPLDTLMAHTAGCYCIAIDPIGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFNYTGDLIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIFGFENA. 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02829 333 ProSitePatterns Trp-Asp (WD) repeats signature. 101 115 IPR019775 -
Seca6g02829 333 Gene3D - 17 167 IPR015943 GO:0005515
Seca6g02829 333 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 206 240 - -
Seca6g02829 333 FunFam THO complex subunit 3 25 185 - -
Seca6g02829 333 Gene3D - 168 328 IPR015943 GO:0005515
Seca6g02829 333 ProSiteProfiles Trp-Asp (WD) repeats profile. 42 69 IPR001680 GO:0005515
Seca6g02829 333 ProSiteProfiles Trp-Asp (WD) repeats profile. 206 247 IPR001680 GO:0005515
Seca6g02829 333 SMART WD40_4 283 321 IPR001680 GO:0005515
Seca6g02829 333 SMART WD40_4 158 196 IPR001680 GO:0005515
Seca6g02829 333 SMART WD40_4 241 280 IPR001680 GO:0005515
Seca6g02829 333 SMART WD40_4 199 238 IPR001680 GO:0005515
Seca6g02829 333 SMART WD40_4 30 67 IPR001680 GO:0005515
Seca6g02829 333 SMART WD40_4 74 114 IPR001680 GO:0005515
Seca6g02829 333 Pfam WD domain, G-beta repeat 202 238 IPR001680 GO:0005515
Seca6g02829 333 Pfam WD domain, G-beta repeat 80 114 IPR001680 GO:0005515
Seca6g02829 333 Pfam WD domain, G-beta repeat 21 66 IPR001680 GO:0005515
Seca6g02829 333 SUPERFAMILY WD40 repeat-like 42 315 IPR036322 GO:0005515
Seca6g02829 333 ProSiteProfiles Trp-Asp (WD) repeats profile. 81 123 IPR001680 GO:0005515
Seca6g02829 333 PANTHER THO COMPLEX SUBUNIT 3 THO3 7 330 IPR040132 GO:0006406
Seca6g02829 333 PRINTS G protein beta WD-40 repeat signature 225 239 IPR020472 -
Seca6g02829 333 PRINTS G protein beta WD-40 repeat signature 101 115 IPR020472 -
Seca6g02829 333 PRINTS G protein beta WD-40 repeat signature 54 68 IPR020472 -
Seca6g02829 333 FunFam THO complex subunit 3 195 329 - -
Seca6g02829 333 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 81 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02829 Seca-Chr6 93509320 93514272 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02829 171 329 Miscellaneous Gene Families AT5G08390 23.125 1.88e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02829 K12880 - gmx:100812126 633.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02829 6 93509320 93514272 Seca6g02829 6 93509320 93514272 ECH