Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02452 ATGCCCATGGCGTCGTGGTGGTGCTCCTCTCCCTGCACCACCGTCGCCGTCACCGTAACCGTAACCACCACCACCTCCCGCCGCTACTCTCTCAGTTCCCACACTCCCCAATTTCACATCAACCTATTCCCACCTTCTTCCTCTCCCCGCTTTTCCACCACTCCATCTTCGCTTCGTTTTAGGGTTCCATGCTCCAACAAAACCGCCGAAAAAACCAGCAAATCAGCCCCCGGCGCCGCTGAACTTGAGTTGCGAGATTCAGCAGCCGTCGATTGCGTGGGAACAGGGCAAGACGTGGAGTGCCTCATCAACGTAGAAGAAGAAAAGGACAGGAGCGGAGAGAAAGATGAATCTTCATCGCCGGATATGCTGTGCCTTGCGGAAGGGCTGTGGGAACTGGCTGTGTTGGTGTCGCCGTTTTTCTTCTGGGGCACCGCTATGGTGGCTATGAAGGAGGTGCTTCCCAAGTGTGGTCCTTTCTTCGTTTCCGCGTTTCGTCTCATCCCCGCTGGGTTCCTTCTTGTTGCCTTCGCAGCTTCCAGAGGAAGGCCTTTTCCTTCTGGCTTCAACGCTTGGCTCTCCATCTCGCTCTTCGCCCTCGTCGATGCTGCTTGCTTTCAGGGTTTTCTTGCAGAAGGGTTGCAGAGGACTTCGGCTGGTTTGGGCAGCGTTATAATTGATTCACAGCCTTTGACAGTGGCTGTGCTTGCAGCTTTGTTTTTTGGTGAGTCCATTGGGATTGTTGGAGCTTCTGGGCTTGTACTTGGTGTCATAGGACTTGTATTACTTGAGTTACCTGCCCTATCATTTGATGAAAGCAACTTCTCACTCTGGGGGAGTGGGGAGTGGTGGATGCTTCTTGCAGCTCAGAGTATGGCAGTTGGCACAGTCATGGTTCGGTGGGTCTCCAAGTACTCTGATCCTGTCATGGCAACTGGATGGCATATGGTTATTGGTGGTCTCCCTCTTGTGGCATTCGCAATTCTTAACAATGATCCTGCTGTAAGTGGGAGTCTTAAAGAGTACAGTTCAAGTGATATATTGGCACTCCTCTACACATCCATTTTTGGAAGCGCTGTTAGCTATGGTGTGTTCTTTTATAGTGCAACAAAAGGTAGCTTGACCAAGCTCAGTTCACTTACCTTTTTGACCCCAATGTTTGCTTCAATTTTCGGGTTTCTATATCTTGGTGAGACCTTCACCCCTGTACAACTAGTTGGGGCAGTTGTTACTATTGCTTCAATATACATGGTTAACTACAGAAACACTTCAGAATAA 1278 0.5016 MPMASWWCSSPCTTVAVTVTVTTTTSRRYSLSSHTPQFHINLFPPSSSPRFSTTPSSLRFRVPCSNKTAEKTSKSAPGAAELELRDSAAVDCVGTGQDVECLINVEEEKDRSGEKDESSSPDMLCLAEGLWELAVLVSPFFFWGTAMVAMKEVLPKCGPFFVSAFRLIPAGFLLVAFAASRGRPFPSGFNAWLSISLFALVDAACFQGFLAEGLQRTSAGLGSVIIDSQPLTVAVLAALFFGESIGIVGASGLVLGVIGLVLLELPALSFDESNFSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLVAFAILNNDPAVSGSLKEYSSSDILALLYTSIFGSAVSYGVFFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFTPVQLVGAVVTIASIYMVNYRNTSE. 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02452 425 PANTHER INNER MEMBRANE TRANSPORTER 121 424 - -
Seca6g02452 425 Pfam EamA-like transporter family 133 263 IPR000620 GO:0016020
Seca6g02452 425 Pfam EamA-like transporter family 280 419 IPR000620 GO:0016020
Seca6g02452 425 SUPERFAMILY Multidrug resistance efflux transporter EmrE 314 422 - -
Seca6g02452 425 SUPERFAMILY Multidrug resistance efflux transporter EmrE 165 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02452 Seca-Chr6 87218059 87221855 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02452 - - gmx:100783291 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02452 6 87218059 87221855 Seca6g02452 6 87218059 87221855 ECH