Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02363 ATGGGGTTGGGTTTGTTAGCTTCGAAGGCCATGAGACCCACCTCGAGGCTCCTCAATTTCCAAAACCCTAGCACCAATGTCCTCCTCCGAACCATCGTTTCCAAACCTGAGCTTCGGAATCCCGAATCTTCCGCCGCACAAGCCCAGCCGGAGCAGCCTCCGCCCCATCTCCCGCCCCGTTCTCCGCTCGCCGGCGCTAGGGTCCACTTCCCCAACCCCGACGACGCCATCGAGGTGTTCGTCGACGGCTACCCCGTGAAAATCCCCAAGGGAATGACCGTTCTTCAGGCCTGCGAGGTTGCCGGCGTTGACATCCCTCGCTTTTGCTATCACAGCAGGCTCTCCATCGCCGGTAACTGCCGTATGTGCCTCGTCGAGGTCGAGAAATCCCCCAAGCCTGTTGCTTCTTGCGCCATGCCTGCTCTTCCTGGGATGAAAATTAAGACCAACACACCTGTGGCAAAGAAAGCTCGAGAAGGGGTGATGGAATTTTTATTGATGAATCATCCATTAGATTGCCCTATCTGTGATCAGGGTGGGGAATGTGATCTTCAGGATCAGTCAATGGCATTTGGTGCTGATCGTGGTCGGTTCACTGAAATGAAGAGATCCGTGGTGGATAAAAATCTTGGACCTTTGGTGAAGACTGTGATGACTAGGTGCATTCAATGTACCAGGTGTGTAAGATTTGCAACAGAGGTTGCAGGGGTTCAGGATCTTGGCATGTTAGGTCGTGGCAGTGGAGAGGAGATTGGAACATATGTTGAAAAACTTATGACAAGTGAACTTTCTGGAAATGTTATAGATATCTGTCCTGTGGGAGCACTCACTTCAAAACCTTTTGCATTCAAAGCCCGGAATTGGGAGTTGAAGGGTACAGAGAGCATTGATGTTACTGATGCTGTTGGATCCAACATTCGAATTGATAGCAGAGGACCTGAAGTCATGCGCATTGTTCCTCGTTTAAATGAGGACATCAATGAAGAATGGATTTCGGACAAGACCCGCTTTTGTTATGACGGTTTGAAAAGGCAGCGGTTAAATGACCCGATGATTCGTGGTCCTGATGGACGCTTTAAGGCTGTGAACTGGCGTGATGCCCTTTCTGTGGTAGCAGAGATTGCCCACCAAGTTAAACCAGAAGAAATTGTTGGAATATCTGGCAAACTTTCTGATGCTGAGTCTATGATAGCACTAAAAGATTTCATAAATAGGATGGGGTCAAATAATGTGTGGTGTGAAGGCATTGGAGTAAATACTAATGCTGATTTCAGATCAGGATATATTATGAATACTAGCATAGCTGGTCTTGAGAAAGCAGATGTTTTCCTGTTGGTTGGTACCCAGGTATATCTATCTGATATATTCATATTTTTGTTAATAATATCTGTTTAA 1395 0.4731 MGLGLLASKAMRPTSRLLNFQNPSTNVLLRTIVSKPELRNPESSAAQAQPEQPPPHLPPRSPLAGARVHFPNPDDAIEVFVDGYPVKIPKGMTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTNTPVAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGADRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTESIDVTDAVGSNIRIDSRGPEVMRIVPRLNEDINEEWISDKTRFCYDGLKRQRLNDPMIRGPDGRFKAVNWRDALSVVAEIAHQVKPEEIVGISGKLSDAESMIALKDFINRMGSNNVWCEGIGVNTNADFRSGYIMNTSIAGLEKADVFLLVGTQVYLSDIFIFLLIISV. 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02363 464 Gene3D - 202 279 - -
Seca6g02363 464 FunFam NADH-quinone oxidoreductase subunit G 76 198 - -
Seca6g02363 464 Pfam 2Fe-2S iron-sulfur cluster binding domain 75 151 - -
Seca6g02363 464 SUPERFAMILY 4Fe-4S ferredoxins 150 286 - -
Seca6g02363 464 Pfam Molybdopterin oxidoreductase 346 451 IPR006656 GO:0016491
Seca6g02363 464 ProSiteProfiles Prokaryotic molybdopterin oxidoreductases 4Fe-4S domain profile. 290 346 IPR006963 GO:0016491
Seca6g02363 464 CDD fer2 77 148 IPR001041 GO:0051536
Seca6g02363 464 FunFam NADH-ubiquinone oxidoreductase 75 kDa subunit 202 279 - -
Seca6g02363 464 ProSitePatterns Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 106 123 IPR000283 GO:0008137|GO:0016020|GO:0042773
Seca6g02363 464 NCBIfam NADH-quinone oxidoreductase subunit NuoG 79 450 IPR010228 GO:0016651|GO:0051536
Seca6g02363 464 ProSiteProfiles His(Cys)3-ligated-type [4Fe-4S] domain profile. 153 192 IPR019574 GO:0016491
Seca6g02363 464 FunFam NADH-ubiquinone oxidoreductase 75 kDa subunit 281 396 - -
Seca6g02363 464 ProSitePatterns Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 173 185 IPR000283 GO:0008137|GO:0016020|GO:0042773
Seca6g02363 464 SUPERFAMILY 2Fe-2S ferredoxin-like 77 149 IPR036010 GO:0051536
Seca6g02363 464 Pfam NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 158 195 IPR019574 GO:0016491
Seca6g02363 464 Gene3D - 76 198 - -
Seca6g02363 464 ProSitePatterns Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 220 230 IPR000283 GO:0008137|GO:0016020|GO:0042773
Seca6g02363 464 ProSiteProfiles 2Fe-2S ferredoxin-type iron-sulfur binding domain profile. 75 153 IPR001041 GO:0051536
Seca6g02363 464 Gene3D - 282 398 - -
Seca6g02363 464 PANTHER RESPIRATORY NITRATE REDUCTASE 146 450 - -
Seca6g02363 464 SMART NADH_G_4Fe_4S_3_2 158 198 IPR019574 GO:0016491
Seca6g02363 464 MobiDBLite consensus disorder prediction 39 67 - -
Seca6g02363 464 SUPERFAMILY Formate dehydrogenase/DMSO reductase, domains 1-3 288 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02363 Seca-Chr6 85737384 85743540 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02363 K03934 - gmx:100802040 819.305