Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02335 ATGGCGACGGGAGAGGTTATTAATAAACCTCTTTCACTTCCTTCATACCCTGAGCAGATGATATTGAAGGCAATAGAAGCACTGAACGAAGAGAATGGCTCCAACAAATCCTCAATATCCAAGCACATAGAATCTACATATGGTGGATTGCCTCAGGGTCACAAGGCACTGCTCAATGTGCACCTTGCAAAAATGAGGGACAGTGGGGAGCTAGTGTTTTGGAAAAACAACTACACCAAGCGTGACCCAAACGCGCCACCGCGGCGGGGCCGTGGCAGGCCACCCAAGCCCAAGGATCCTCTGGCACCGGCCACCATCTTGTCACCGCCTAGGCCCAGGGGCCGCCCCCCAAAAGACCCAAATGGCCCACCAAGACCGCCCAAGTTTAAGGCCTCAACTGGGAGCGGCAGGCCCCGGGGTCGGCCCAGGAAGATGGCTCGGCCTGCTGGAAGCTTTGGCGGAGCACCGCCTTCAACGGTTAGGGCAGGTGGTGGTAGTGGGAGGCCCAGAGGTAGGCCTCCGAAGATGAAGGCTCCATTGACAGAAATTAGTGCTTAA 558 0.5591 MATGEVINKPLSLPSYPEQMILKAIEALNEENGSNKSSISKHIESTYGGLPQGHKALLNVHLAKMRDSGELVFWKNNYTKRDPNAPPRRGRGRPPKPKDPLAPATILSPPRPRGRPPKDPNGPPRPPKFKASTGSGRPRGRPRKMARPAGSFGGAPPSTVRAGGGSGRPRGRPPKMKAPLTEISA. 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02335 185 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 12 82 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca6g02335 185 FunFam HMG-Y-related protein A 8 91 - -
Seca6g02335 185 SUPERFAMILY "Winged helix" DNA-binding domain 10 95 IPR036390 -
Seca6g02335 185 PANTHER HISTONE H1 12 177 - -
Seca6g02335 185 MobiDBLite consensus disorder prediction 82 96 - -
Seca6g02335 185 Gene3D - 11 87 IPR036388 -
Seca6g02335 185 MobiDBLite consensus disorder prediction 97 127 - -
Seca6g02335 185 MobiDBLite consensus disorder prediction 78 185 - -
Seca6g02335 185 PRINTS High mobility group protein (HMGY) signature 86 98 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Seca6g02335 185 PRINTS High mobility group protein (HMGY) signature 112 123 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Seca6g02335 185 PRINTS High mobility group protein (HMGY) signature 101 112 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Seca6g02335 185 PRINTS High mobility group protein (HMGY) signature 125 144 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Seca6g02335 185 SMART AT_hook_2 167 179 IPR017956 GO:0003677
Seca6g02335 185 SMART AT_hook_2 88 100 IPR017956 GO:0003677
Seca6g02335 185 SMART AT_hook_2 136 148 IPR017956 GO:0003677
Seca6g02335 185 SMART AT_hook_2 110 122 IPR017956 GO:0003677
Seca6g02335 185 Pfam linker histone H1 and H5 family 18 75 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca6g02335 185 SMART h15plus2 10 77 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca6g02335 185 PRINTS AT-hook-like domain signature 108 119 IPR017956 GO:0003677
Seca6g02335 185 PRINTS AT-hook-like domain signature 88 98 IPR017956 GO:0003677
Seca6g02335 185 PRINTS AT-hook-like domain signature 134 144 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02335 Seca-Chr6 85300677 85302701 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02335 - - gmx:100803968 235.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02335 6 85300677 85302701 Seca6g02335 6 85300677 85302701 ECH