Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02317 ATGAGTGTGAGTAGAAAGAGAGGTTACCCTTCTGGTTCTCCTTCTTTTCCTTCACCTTCAACATCACTCCCTCACAGCAACAATGTCCCAAACCTGTCACCGAAGATCAAATCCCTCTTTGAAATCATCTCCACCACTCCCTCTTTGACCGTCGAGAAAGCCCTAGAAGAAACTGGCATTGATGTCACTCAGCAAGACGTTGAAGACATCCTCAAACTCTCTTACAGGTTCCCCGGCCAAGCCGTCAAGTTCTTCCGTTGGGCCGGCCACCGCCTCGACCACAACCACACCCCTTGTTCCTGGAACCTCGTCATCGACATTTTAGGTAAAAACCGTTTCTTCGATGCAATGTGGGACGCCATTAAATCCATGAGGAGAGAAGGCTTGATTTCCCGCGCAACCTTCGCCTCCGTTTTCAGCAGCTACATCGCTGCTGGCCGCATCCGCGACGCCATTGTGGCGTTCGAGGTCATGGACGGTTACGGGTGCGTTAGGGATGCTGTTGCTTTGAATTCTCTATTGAGTGCTATGTGTAGGTATGCTAGGACCATTGATGCTTGTGATTACTTACAAGTTGCTAAGAAAATGGTTAGGCCTGATGCTGATACTTATGCAATTTTGATGGAGGGGTGGGAGAATGAAGGGGGTGTTGTTGGTGCTAAGGAGACTTTTGCTGAGATGGTTATTGAGATTGGTTGGGACCCTGCCAATGTGCCTGCCTATGATTCATTGTTGTGTACTTTGATTAAGGGACCTGATGGGATTCGAGAAGCGGTTAAGTTCTTTGATTCTATGAGATATAGGAGGTGTTACCCTGGAGTGAGGTTTTTCAAGCTTGCACTTGAGGAGTGTGTTAAGTGTCATGATATTCGAATGGCTGAGTTCTTTTGGGAGATGATGGTGGGCAGAACTTCTGTCAAGCCCACCACACCAATGTATAATTCGATGATTACCTTGCATTGCTATCACAATGATACTGATACTGCTAGAAAGATGCTGGATGACATGCTTTACAAGGGGGCTTTTCCAGATTCGCTAACTTATAATTTGTTGTTTCGGTTCTTGATTAAGAGCAGGAAATTACGGGAGGCGTCGGTGATATTCAATGAGATGGTGAAAAATGAGTGTGTGCCCGACCAGGCTAATTGTGATGCAGCTGTTAGAATTTACTTAGATAATGGGGATCCTTTTAAGGCTATGAAAGTTTGGAAATGCTTGGTGGAGAATTACCGTGAGGATTTAGAAGATATAGCAAATTTACTGATTGTAGGGCTTCGAGATCTTAATAGGGTCCCAGAAGCAGTTAAGTATGCCGAGGATATGATTGGCAGAGGAATCAAGCTAACCTCTTCCACATTGTCTAAGTTGAAACAGAGCCTTGCCAAAGAAAGAAAAGAATTTGTGTATGAAGAACTTTTGACAAAGTGGAAAACTCATTAG 1440 0.4493 MSVSRKRGYPSGSPSFPSPSTSLPHSNNVPNLSPKIKSLFEIISTTPSLTVEKALEETGIDVTQQDVEDILKLSYRFPGQAVKFFRWAGHRLDHNHTPCSWNLVIDILGKNRFFDAMWDAIKSMRREGLISRATFASVFSSYIAAGRIRDAIVAFEVMDGYGCVRDAVALNSLLSAMCRYARTIDACDYLQVAKKMVRPDADTYAILMEGWENEGGVVGAKETFAEMVIEIGWDPANVPAYDSLLCTLIKGPDGIREAVKFFDSMRYRRCYPGVRFFKLALEECVKCHDIRMAEFFWEMMVGRTSVKPTTPMYNSMITLHCYHNDTDTARKMLDDMLYKGAFPDSLTYNLLFRFLIKSRKLREASVIFNEMVKNECVPDQANCDAAVRIYLDNGDPFKAMKVWKCLVENYREDLEDIANLLIVGLRDLNRVPEAVKYAEDMIGRGIKLTSSTLSKLKQSLAKERKEFVYEELLTKWKTH. 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02317 479 NCBIfam pentatricopeptide repeat 347 379 IPR002885 -
Seca6g02317 479 NCBIfam pentatricopeptide repeat 100 129 IPR002885 -
Seca6g02317 479 NCBIfam pentatricopeptide repeat 312 344 IPR002885 -
Seca6g02317 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Seca6g02317 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Seca6g02317 479 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 19 465 - -
Seca6g02317 479 Pfam PPR repeat 100 129 IPR002885 -
Seca6g02317 479 MobiDBLite consensus disorder prediction 1 28 - -
Seca6g02317 479 Gene3D Tetratricopeptide repeat domain 75 232 IPR011990 GO:0005515
Seca6g02317 479 Gene3D Tetratricopeptide repeat domain 233 409 IPR011990 GO:0005515
Seca6g02317 479 Pfam PPR repeat family 309 354 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02317 Seca-Chr6 84981472 84982911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02317 71 477 Glycosyltransferase AT1G05670 22.967 8.72e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02317 - - tpra:123894758 722.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02317 6 84981472 84982911 Seca6g02317 6 84981472 84982911 ECH