Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02309 ATGGGAGATCCATCGGAGAGGTTGGGATCGGAGGGTTTGGACTCCGGAACCGCCATTAAGACTGATGACTTGTGCATGGAAATCGATCCGCCATTCCAGGAAAACGTTGCAACCGCCGAGGACTGGCGGAAAGCCCTCAACAAAGTCGTTCCCGCCGTCGTTGTCCTCCGTACCACCGCTACTCGCGCCTTCGACACCGAGTCCGCCGCCGCTAGCTATGCCACTGGCTTCATCGTCGACAAGCGTCGCGGTATTATTCTCACCAATCGCCATGTCGTCAAGGCCGGTCCTGTAGTTGCAGAAGCCATGTTTTTGAACCGCGAAGAGGTTCCGGTGCATCCGATATACAGAGATCCAGTGCATGATTTTGGGTTCTTTCGTTATGATCCTGGTGCTGTACAATTTCTAAACTATGAGGAGATACCTCTTGCTCCCGAGGCAGCTTGTGTTGGACTAGAAATCAGAGTTGTTGGTAATGATAGTGGTGAGAAGGTTTCCATTTTAGCTGGTACTCTTGCTCGTTTAGATAGGGATGCCCCTCATTATAAGAAGGATGGGTATAATGACTTCAACACATTCTATATGCAAGCTGCATCTGGGACCAAAGGAGGATCAAGTGGTTCCCCAGTCATAGATTGGCAAGGCAGGGCAGTGGCTCTGAATGCTGGGAGCAAGTCTTCAAGTGCATCTGCATTTTTTTTACCTCTAGAACGAGTTGTGAGGGCATTAAGGTTACTTCAAAAGGGCAGTGAAACTTATGTTGACAAATGGAAGGCAGTTTTTATACCTCGTGGTACACTTCAGGTGACTTTTCTCCATAAAGGGTTTGATGAGACTCGTCGACTTGGCCTCAAGAGTGAGACAGAGCAGATAGTACGGCATGCTTCTCCAGCCAGTGAAACCGGAATGCTTGTTGTGGACTCTGTGGTGCCAGGTGGGCCAGGTCATAAACATTTGGAACCGGGTGATGTACTTGTTCGTGTCAATGGAGAAGTCATTACTCAATTCCTGAAACTGGAGACTATACTTGATGACAGTGTAAACACGTCTATTGCATTACAAATTGAAAGGGGTGGAACATCAAAGAGTTTAACTTTGTTGGTACAAGATTTACACTCAATAACTCCTGATTTCTTCTTAGAAGTTAGTGGGGCAGTAATACATCCTCTTTCTTATCAGCAGGCTAGAAACTTCCGTTTCCATTGTGGCCTTGTTTATGTGGCTGAACCAGGATATATGCTCGTTAGAGCTGGAGTTCCTCGCCATGCAATAATTAAGAAATTTGCTGGTGAAGAAATATCTTGTATTGAGGAACTAATATCAGTTCTCTCTAAGCTATCTAGGGGTGCTCGAGTACCATTGGAGTATATAAGCTACGTGGACCGTCATCGAAGGAAGTCTGTGTTGGTGACTGTTGATCGCCATGAATGGTATGCACCTCCCCAGATATACACTCGTGATGACAGTACTGGTCTCTGGATTGCTAAGCCAGCTTTTCAGCCCGATTCCCCTTTTCTATCATCTGGTGCTAAAGAAGTTGGAAATCTAACCAGACAGCCAGTTTCACTAACTAGTGAGCATGCTTGTGGGGGGCATGCGTGTGAAGGTAACAATCAGGAGTTGGTTGATGGTGTCACAAGCATGGAAACCAATTGTGAAGATCCTTCAGAATGTGTATCTCACCACAATGCATCTGATGGCATGGTGAAAAAACGGAGAGTAGATGATGATTTATCAAATGATGGAAGCGTTGTTGCTGATTTTTCTTTAAATGAAACCCAGGAAACTAAGCTAGAAAAGCCTAGTGTTATACAGGATGATGGGTTAATGGACTACCAAGGTGCAGTTGCTGTCACAGCAAATGCATCAGTTGCTGAACGAGTGATCGAGCCTACTCTTGTGATGTTTGAGAAAACTCCACCACAAAAGCTAGCTCAAGGGGTGAGGATTGCCCAAGGCCTATGA 1965 0.4601 MGDPSERLGSEGLDSGTAIKTDDLCMEIDPPFQENVATAEDWRKALNKVVPAVVVLRTTATRAFDTESAAASYATGFIVDKRRGIILTNRHVVKAGPVVAEAMFLNREEVPVHPIYRDPVHDFGFFRYDPGAVQFLNYEEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSSSASAFFLPLERVVRALRLLQKGSETYVDKWKAVFIPRGTLQVTFLHKGFDETRRLGLKSETEQIVRHASPASETGMLVVDSVVPGGPGHKHLEPGDVLVRVNGEVITQFLKLETILDDSVNTSIALQIERGGTSKSLTLLVQDLHSITPDFFLEVSGAVIHPLSYQQARNFRFHCGLVYVAEPGYMLVRAGVPRHAIIKKFAGEEISCIEELISVLSKLSRGARVPLEYISYVDRHRRKSVLVTVDRHEWYAPPQIYTRDDSTGLWIAKPAFQPDSPFLSSGAKEVGNLTRQPVSLTSEHACGGHACEGNNQELVDGVTSMETNCEDPSECVSHHNASDGMVKKRRVDDDLSNDGSVVADFSLNETQETKLEKPSVIQDDGLMDYQGAVAVTANASVAERVIEPTLVMFEKTPPQKLAQGVRIAQGL. 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02309 654 Gene3D - 29 140 IPR043504 -
Seca6g02309 654 PANTHER PRO-APOPTOTIC SERINE PROTEASE NMA111 12 648 - -
Seca6g02309 654 Gene3D - 146 256 IPR043504 -
Seca6g02309 654 Pfam PDZ-like domain 373 446 IPR025926 -
Seca6g02309 654 Pfam PDZ domain 305 357 IPR041489 -
Seca6g02309 654 CDD PDZ_serine_protease 280 366 - -
Seca6g02309 654 SUPERFAMILY Trypsin-like serine proteases 40 244 IPR009003 -
Seca6g02309 654 Gene3D - 279 372 IPR036034 GO:0005515
Seca6g02309 654 Pfam Peptidase family M50 266 375 IPR008915 GO:0006508
Seca6g02309 654 Pfam Trypsin-like peptidase domain 74 220 - -
Seca6g02309 654 SUPERFAMILY PDZ domain-like 304 403 IPR036034 GO:0005515
Seca6g02309 654 PRINTS HtrA/DegQ protease family signature 191 208 IPR001940 GO:0004252|GO:0006508
Seca6g02309 654 PRINTS HtrA/DegQ protease family signature 213 230 IPR001940 GO:0004252|GO:0006508
Seca6g02309 654 PRINTS HtrA/DegQ protease family signature 318 330 IPR001940 GO:0004252|GO:0006508
Seca6g02309 654 PRINTS HtrA/DegQ protease family signature 84 96 IPR001940 GO:0004252|GO:0006508
Seca6g02309 654 PRINTS HtrA/DegQ protease family signature 150 174 IPR001940 GO:0004252|GO:0006508
Seca6g02309 654 ProSiteProfiles PDZ domain profile. 269 370 IPR001478 GO:0005515
Seca6g02309 654 SMART pdz_new 280 359 IPR001478 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02309 Seca-Chr6 84560120 84582204 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02309 K22686 - gmx:100809144 1175.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02309 6 84560120 84582204 Seca6g02309 6 84560120 84582204 ECH