Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02248 ATGGCTCTTTCTCTCAACGTCTCATTGTGTTCCACTTCAAAATTTCATCATCACTCAAGGTCCACACCCTCCTTTTCCACCACCTCCACAGCTTCTTTTTCTCAATTTCTGAGACTCAATCCGAAGCAAAGTCACCAAGTCTCTCAAAAACTCACATTTTCATTAGGTGAATCTGTGTCTAGCGCCACCCTGGTTGCTCTCCTCTCTGCTTCTTTCTTCCTCGTTGATCCCGCACTTGCATTCAAGGGTGGAGGGCCATATGGGCAAGAGGTGACTAGGGGGCAAGATCTTACTGGGAAGGATTTCAGTGGCAAGACTCTGATCAAACAAGACTTTAAAACGTCCATACTTCGACAAGCTAATTTTAAAGGTGCAAAATTGTTAGGTGCTAGCTTCTTTGATGCTGATTTAACAGGTGCTGATCTTTCCGATGCTGATCTCAGAAGTGCAGATTTTTCCCTGGCAAATGTGACAAAGGCAAATTTGAGCAATGCTAACTTGGAAGGTGCACTTGCAACAGGAAATACATCTTTTAAGGGATCAAATATTACAGGCGCTGGTATGTAG 567 0.4374 MALSLNVSLCSTSKFHHHSRSTPSFSTTSTASFSQFLRLNPKQSHQVSQKLTFSLGESVSSATLVALLSASFFLVDPALAFKGGGPYGQEVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFKGSNITGAGM. 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02248 188 Gene3D - 80 188 - -
Seca6g02248 188 Pfam Pentapeptide repeats (8 copies) 115 153 IPR001646 -
Seca6g02248 188 SUPERFAMILY Pentapeptide repeat-like 89 185 - -
Seca6g02248 188 PANTHER THYLAKOID LUMENAL 15 KDA PROTEIN 1, CHLOROPLASTIC 1 188 IPR044213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02248 Seca-Chr6 83423890 83427142 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02248 - - gmx:100500352 267.314