Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02115 ATGAGGATCACGGTTGAGCCAGCACGTTCTCAAACTCCCAAAGACGAAGTCGAATGGGTCCCACTCACCAAACACCCTCTCTTCACCGCCACCACGCACGCCGCTTCCTCCTCCTCCTCCTCCGGCGGTGCCGCTTCCCGAAACCTGTTGGCATGGGACGGAGCCTCTCGCCTCTACTTCTGGGACTCCAACAACAACTGCCTCCATCGCCTCTCTCTTCGCCTCGGCGACCCCGATCCCAGTTCCGTCCTGGCCGCTTCCCCCTCTAAGGTGTTGCAAACGGATGTGATGCTCGACTTTGATGTCCATAAAATCTCCATCAACCGGAATGGAACAGCAATACTCCTTTTCGGTTCTGAAAGACTCTGCGTTATGTACCTCTATGGACGCACTTCCAAAAAGGATGTAAATCTGATTTGCAGGACTATTACTGTTGGTTCTCAAACATATTCCCCTGGGAACAATGATATTCGTATATTAGAAGGATTATGGCACCCATATAGTGATACTCATCTGGGAATCCTTTCTTCTGACTCAGTTTTCCGGCTTTTCAATCTGGCTGTGGATCCTTTGCAACCAGAACAAGAATATTATTTACAGCCTGTGGAGCCAGGTAGATCCAGAAATGCCTCATCAGTGTGCCCAGTTGATTTTTCTTTCGGGGGAGACCACTTATGGGACAGGTTTAGTGTTTTTATTTTATTCAGTGATGGGGCAATCTATGTACTTTGCCCGGTTGTTCCATTTGGAAGTCTCTTCAAATGTGAGTCTCTATTAGAAATATACAATGATGCTCATACTTTCGGGCTAATATCAGCCCACTCCATAGCAGCTAGTAATTCAAAATTGGCAATCTCCTGGCTAGAAGCAACATTTCCTGATTTACAGAACCCAGAAACTGAAGGAGACAGCCAGTCTTTTCTAAGAGCTCATGCTCATGCTTTATTTGATGCATCTCTTGTCTTGCAGGGACCTCTACAGAGAGTAGGTCAAAGTGGAAATGAAGATTCAGTTGGTCGCAGTGCAGAATGTGAAGGTCGTGCAGTTAGTTTTCTCTATAATTTAGTCAGCAAAGACTCTATTATGGTGACTGCCTGGAGTGGTGGGCAATTACAGATAGATGCTCTAGCTGATGAGATCCAACCTGTCTGGATTGTTGGTAGTCCACCTCGTCTTCGTGTTGATTCCCATGACCAAATTCTTGGCCTTGCTATGATTTGTGAGTCAATTGCTAGCAGCCGTCAGGGGAAGCTTGATCATAATGCCTGGTTGGGTAATCCACCCCCTCTATTGAGACTGGCTATTGTTGATTTGGCTCTGCCACGGAGAGCAGAAAGTGGTTATAATATTTCATTGTTCATTGATACCCTTATGCCAGAAAGAATATATTCCCTTCATGATGGAGGGATTGACTCAATAGTATTGCATTTTCTTCCATTTACAAGTCAGACAAATGGAAAGGATGATACAATGAGATCACCTTCTGTGCATCCTGTTCTAAATACTTGCCAGAGTGGATACACTTCAGAGCCCTCCCTTTATGGTTTTGTGTCATTGTCAGATTCATTTGGATATTCATGGATTGTAGCTGTGACTCTTTCTCGAGAATGTGTTGTGCTTGAGATGAAAAATTGGAATCTCTTGCTTCCAATTAGCATTGATATGGAGAAGAAATCCATTCAGTTAGATGGGCAATCAAAAGAGAGAGATATACCACCAATAATTAGTAAAGAACTACTGAGTGGGCCCAAGGAGGTACTTGTTCCTTGGGCCTCTCCGAGTCTGCGTTCTGTTGCAGCTGATTCAATTGAAGGTCGATCAACATTACATCAGTATTTCAAGCTGTTTCATGAAACTTACGTGGAGTATGCACATAAGGTGTACCTGGAACTCAAGCATCACGCTCCTCAGTTGAAGAAAATCATCAATGACCAACATTCTCGTTTGGGTGATGCACAGCAGAAACTTATGAAAGTTGAGGAGAAACAGTCTATATTACAGAAAAGGATAGAACGTGCAATTCAAACGCACAATTCTTTGGAAGAGCGCTTACAACGATTAAGGAACTTACCTTGCGCTCTCAAAAAACCACTGTCCAAAGCAGAGCGACAGTTCAAGTCTGAGCTCGACCACTTCAAGGAAGTTGAATTGGATGCTTTGCATTCTTCTGTGGACGCTCTAAGTGCAAGGCTGAGAAGGCACATGCAAGCTTCGAAAGCTAGTCACCAACAACAAAAAATATCAGGGAAGAAAATTTGTGCTGGAGATGACCAGATATCCATGCTCAAATCGTCACTTGAAAAACTTTCACTTGTAAATACTGAAAATTCCAAGAAAATTAAGCTTGTCGAATCTACATTGAAAAACAAAGAAAGAAGCAGCAGAGAATCAAGCTTGCCTATGCTTCAAAACTGTTAG 2418 0.4367 MRITVEPARSQTPKDEVEWVPLTKHPLFTATTHAASSSSSSGGAASRNLLAWDGASRLYFWDSNNNCLHRLSLRLGDPDPSSVLAASPSKVLQTDVMLDFDVHKISINRNGTAILLFGSERLCVMYLYGRTSKKDVNLICRTITVGSQTYSPGNNDIRILEGLWHPYSDTHLGILSSDSVFRLFNLAVDPLQPEQEYYLQPVEPGRSRNASSVCPVDFSFGGDHLWDRFSVFILFSDGAIYVLCPVVPFGSLFKCESLLEIYNDAHTFGLISAHSIAASNSKLAISWLEATFPDLQNPETEGDSQSFLRAHAHALFDASLVLQGPLQRVGQSGNEDSVGRSAECEGRAVSFLYNLVSKDSIMVTAWSGGQLQIDALADEIQPVWIVGSPPRLRVDSHDQILGLAMICESIASSRQGKLDHNAWLGNPPPLLRLAIVDLALPRRAESGYNISLFIDTLMPERIYSLHDGGIDSIVLHFLPFTSQTNGKDDTMRSPSVHPVLNTCQSGYTSEPSLYGFVSLSDSFGYSWIVAVTLSRECVVLEMKNWNLLLPISIDMEKKSIQLDGQSKERDIPPIISKELLSGPKEVLVPWASPSLRSVAADSIEGRSTLHQYFKLFHETYVEYAHKVYLELKHHAPQLKKIINDQHSRLGDAQQKLMKVEEKQSILQKRIERAIQTHNSLEERLQRLRNLPCALKKPLSKAERQFKSELDHFKEVELDALHSSVDALSARLRRHMQASKASHQQQKISGKKICAGDDQISMLKSSLEKLSLVNTENSKKIKLVESTLKNKERSSRESSLPMLQNC. 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02115 805 PANTHER NUCLEOPORIN NUP84-RELATED 12 792 IPR037700 GO:0000055|GO:0000056|GO:0006913|GO:0017056
Seca6g02115 805 Pfam Nuclear pore component 449 783 IPR019321 -
Seca6g02115 805 Pfam Nuclear pore component 22 221 IPR019321 -
Seca6g02115 805 Coils Coil 642 690 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02115 Seca-Chr6 81176564 81183283 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02115 K14318 - gmx:100801853 1384.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02115 6 81176564 81183283 Seca6g02115 6 81176564 81183283 ECH