Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02010 ATGGCCGATCAGTTAGCGAAGGCCGAGGATTTCGAGAAGAAAGCTGAGAAGAAGCTCAGCGGTTGGGGCTTGTTCGGCTCCAAGTATGAAGACGCTGCTGATCTCTTCGATAAAGCCGCCAATTCCTTCAAGCTCGCTAAATCATGGGACAAAGCGGGATCGACATACCTAAAGTTGGCGAATTGTCATTTAAAGTTGGAAAGCAAGCATGAAGCTGCACAAGCTTATGTTGATGCTGCACATTGCTATAAAAAGACTAACATAAATGAGGCTGTATCTTGCTTAGACCGCGCTGTAAATCTTTTGTGTGATATTGGTAGATTGTCCATGGCTGCTAGATATTTGAAGGAAATTGCTGAGCTATATGAGTCAGAACAGAATATTGAGCAGTCTGTTGTTTACTATGAAAAATCAGCTGACTTTTATCAAAATGAAGAAGTGACAACTTCGGCAAACCAGTGCAAGCAAAAAGTTGCTCAATTCGCTGCTCAGCTAGAGCAATATCAGAAGTCTATTGAGATTTATGAAGAGATAGCTCGTCAATCTCTTAACAATAATTTGCTGAAGTATGGAGTTAAAGGTCATCTTCTTAATGCTGGCATTTGCCAACTCTGTAAAGGGGATGTTATTGCGATAACCAACGCATTAGAGAGATATCAGGAATTAGATCCAACATTTTCAGGAACACGTGAATATAGATTATTGGCGGATATTGCTGCTGCAATTGATGAAGAAGATGTTGTAAAGTTTACTGATGTTGTCAAGGAATTTGACAGCATGACTCCTCTGGATTCTTGGAAGACAACACTTCTTTTGAGGGTGAAGGAAAAGCTGAAAGCCAAAGAACTCGAGGAGGATGATCTTACTTAA 870 0.4057 MADQLAKAEDFEKKAEKKLSGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGSTYLKLANCHLKLESKHEAAQAYVDAAHCYKKTNINEAVSCLDRAVNLLCDIGRLSMAARYLKEIAELYESEQNIEQSVVYYEKSADFYQNEEVTTSANQCKQKVAQFAAQLEQYQKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVIAITNALERYQELDPTFSGTREYRLLADIAAAIDEEDVVKFTDVVKEFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT. 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02010 289 PRINTS NSF attachment protein signature 120 137 IPR000744 GO:0006886
Seca6g02010 289 PRINTS NSF attachment protein signature 152 175 IPR000744 GO:0006886
Seca6g02010 289 PRINTS NSF attachment protein signature 224 244 IPR000744 GO:0006886
Seca6g02010 289 PRINTS NSF attachment protein signature 28 47 IPR000744 GO:0006886
Seca6g02010 289 PRINTS NSF attachment protein signature 91 108 IPR000744 GO:0006886
Seca6g02010 289 PRINTS NSF attachment protein signature 255 275 IPR000744 GO:0006886
Seca6g02010 289 PRINTS NSF attachment protein signature 183 202 IPR000744 GO:0006886
Seca6g02010 289 Pfam Soluble NSF attachment protein, SNAP 7 278 - -
Seca6g02010 289 SUPERFAMILY TPR-like 7 280 IPR011990 GO:0005515
Seca6g02010 289 FunFam Alpha-soluble NSF attachment protein-like 6 285 - -
Seca6g02010 289 Coils Coil 151 185 - -
Seca6g02010 289 Gene3D Tetratricopeptide repeat domain 4 288 IPR011990 GO:0005515
Seca6g02010 289 CDD SNAP 7 278 IPR000744 GO:0006886
Seca6g02010 289 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 4 279 IPR000744 GO:0006886
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02010 Seca-Chr6 79216962 79222171 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02010 K15296 - jre:109004758 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00825 8 10971509 10975924 Seca6g02010 6 79216962 79222171 ECH
Seca6g02010 6 79216962 79222171 Seca6g02010 6 79216962 79222171 ECH
Seca8g00825 8 10971509 10975924 Seca6g02010 6 79216962 79222171 PCT