Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01988 ATGTCGTGCGTCAACAATGCCTTCGCCTTCACCTCTATCTTGCCCTCTCCACCGAGGAAATCAACCAAATCAAGGACCCCTATTTCCTGTTCCCTTCCAGGAACAGTTGCTGAACCCAAAACTACAGCTACTGCTGAACCACTTTTGCTTAATGCAGTTCGTGGGATAGATGTTGAAAGACCCCCAGTTTGGCTAATGAGGCAAGCAGGGAGGTACATGAAGAGTTACCAAACCATCTGTGAGAAATATCCTTCATTTCGTGAGAGGTCTGAAAATGTTGATCTTGTGGTGGAAATTTCATTGCAACCATGGAATGTTTTCAAGCCTGATGGGGTGATTTTATTCTCAGACATTCTTACCCCACTTTCTGGAATGAATATACCCTTTGATATTGTCAAGGGTAAAGGTCCTATCATATTTGATCCTATTCACACAGCTGCCCAGGTTGATCAAGTGAGGGAGTTTATTCCTGAAGATTCAGTTCCATACGTTGGTGAAGCACTGACCATTTTGAGGAAAGAGGTGGATAATAAAGCTGCAGTCCTTGGTTTTGTGGGAGCTCCATTCACCTTGGCATCATATGTGGTTGAAGGTGGTTCATCAAAGAACTTTTCAAAAATAAAGAGATTGGCTTTCTCTGAATCCAAGGTCCTCCACTCATTACTGCAGAAATTTACAACCTCAATGGCAAGATACATTCAATACCAAGCTGACAATGGAGCTCAAGCTGTTCAGATCTTTGACTCATGGGCAACAGAGCTTAGTCCAGTAGATTTTGAAGAATTCAGTTTGCCTTACTTGAAGCAGATTATTGATACAGTGAAGAAAACACATCCAGGACTTCCTCTAATCCTCTATGCAAGTGGGTCTGGGGGCTTGCTTGAGAGACTAGCTTTGACAGGTGTTGATGTAGTTAGCTTGGATTGGACTGTTGATATGGCTGATGGTAGGAGGCGACTAGGACCAAATATAGCTGTCCAGGGTAATGTGGACCCTGGTATTCTTTTCGGTTCAAAAGAGATGATCACTGATCGGATATATGATACTGTGAGAAAAGCAGGTAGAGGGAAACATATCCTGAATCTTGGTCATGGCATTAAAGTAGGTACACCTGAGGAGAATGTTGCACATTTTTTTGAGGTTGCCAAAGGAATCAGATACTAA 1164 0.427 MSCVNNAFAFTSILPSPPRKSTKSRTPISCSLPGTVAEPKTTATAEPLLLNAVRGIDVERPPVWLMRQAGRYMKSYQTICEKYPSFRERSENVDLVVEISLQPWNVFKPDGVILFSDILTPLSGMNIPFDIVKGKGPIIFDPIHTAAQVDQVREFIPEDSVPYVGEALTILRKEVDNKAAVLGFVGAPFTLASYVVEGGSSKNFSKIKRLAFSESKVLHSLLQKFTTSMARYIQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIIDTVKKTHPGLPLILYASGSGGLLERLALTGVDVVSLDWTVDMADGRRRLGPNIAVQGNVDPGILFGSKEMITDRIYDTVRKAGRGKHILNLGHGIKVGTPEENVAHFFEVAKGIRY. 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01988 387 CDD URO-D 50 383 IPR006361 GO:0004853|GO:0006779
Seca6g01988 387 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 182 198 IPR000257 GO:0004853|GO:0006779
Seca6g01988 387 NCBIfam uroporphyrinogen decarboxylase 49 383 IPR006361 GO:0004853|GO:0006779
Seca6g01988 387 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 62 71 IPR000257 GO:0004853|GO:0006779
Seca6g01988 387 Gene3D - 35 387 IPR038071 -
Seca6g01988 387 FunFam Uroporphyrinogen decarboxylase 38 387 - -
Seca6g01988 387 Pfam Uroporphyrinogen decarboxylase (URO-D) 47 383 IPR000257 GO:0004853|GO:0006779
Seca6g01988 387 SUPERFAMILY UROD/MetE-like 46 386 IPR038071 -
Seca6g01988 387 Hamap Uroporphyrinogen decarboxylase [hemE]. 46 386 IPR006361 GO:0004853|GO:0006779
Seca6g01988 387 PANTHER METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED 43 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01988 Seca-Chr6 78863102 78867494 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01988 K01599 - gmx:100817154 709.909