LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca6g01980	ATGGCTAGTCTTCCTTCATCAACAGCTGCAGCTGTGATATTATGGCATGCAATTGTGTTCCTGGTTGTTTCAAATTTGGCCCCTGCTGCTTCAAGCCTTGATGATGCCACAAATGGACACACAAAACAGAGAAATGAGGTAATCGATGCTTATCATGGAGCTGTTGCCACTGATGACCGTCGATGCTCCAGGATTGGGATGAATGCTCTCCATGATGGAGGACATGCAGTGGATGCTGCTGTGGCTGCTGCTCTTTGTTTGGGGGTTGTGAGTCCAGCTTCAAGTGGCCTTGGTGGTGGAGCCTTTATGCTTCTCAGGTTAGCTGATGGGGTGGCTAAGGCCTTTGATATGAGAGAAACTGCTCCTATTCTTGCTTCCAAGAATATGTATGGTGGCAATACTACTTTGAAGGCTAAAGGTGGTCTCTCTGTAGCAGTCCCTGGAGAACTTGCTGGTCTTCACAAGGTGTGGAAACAACATGGGAAGCTTCCATGGCAGAGACTTGTGAAGCCAGCTGAGATTCTTGCTAGTAGAGGGTTTAAGATATCACCATACCTACGGATGCAGATGGAAAGAACAGAGTCAGATATATTGAATGACCCTGGTCTTCGCAGTGTATTTGCCCCAAATGGGGAACTCTTGAAGGCTGGTGACATATGCTACAATAAGAAACTAGCACACACTCTCAATACAATATCTAAGTATGGTCCACAAGCCTTCTATGGTGGATTCATTGGCCTTAATTTAGTTAGAGATGTTCACAAAGCAGGAGGGATATTAACCATTGAAGACCTCAAAAGATACACTGTTAAACAAAAAGTCCCCATATCTACAGATGTTCTTGGACTAAAAATCCTTGGCATGCCTCCCCCTTCTGGTGGGCCTCCAATGATGCTGCTGCTAAACATTCTAGCTCAATATGAGCTACCTTCTGGCCTTTCTGGGGCCCTCGGGATCCATCGAGAAATTGAAGCTTTGAAACATGTATTTGCTGTGAGAATGAATCTTGGTGATCCTGATTTTGTAAATGTAACTGGGATTGTTTCTGATATGCTTTCTCGTAAGTTTGCTCAAGTGTTAAAAAAAGACATCAATGATAATAGGACTTTTGGTCCCAGTCATTATGGTGGCAGGTGGAATCAGATCAATGATCATGGTACAAGCCATGTGAGCATAATAGATGTTGAGAGAAATGCCATTTCCATGACTACCACAGTAAATGAATATTTTGGTTCAAAGATCCTTTCAACAAGTACAGGAATAGTACTGAACAATGAGATGGATGATTTTTCTATGCCTAGAAATGTTTCCAAGGATGTTCCACCACCAGCTCCTGCCAATTTCATCATGCCAGGAAAGCGCCCATTATCATCCATGTCACCAACTATTGCCCTCAAGGATGGGAAACTGAAAGCTGTAGTAGGTGCAAGTGGAGGACCTATGATTATTGGGGCAACTTCAGAGGTTCTTTTGAATCACTTTGTCAAAGGAATGGATCCTTTTTCTTCTGTAACTGCCCCAAGAGTCTATCATCAGCTGATACCTAACATAGTTAATTATGAGAATTGGACAACTGTAAGCGGTGACCACATTGAACTTCCTGCTGATATCAGGGAAGCCCTTAGAAGTAAGGGTCATGTCCTAGAGGGCCTTGCCGGTGGGTCTGTTTGTCAATTTATTGTTCTAGACAATGTTGAGTCTTCTGGAAGGAATAAAGAAATTGAAAAGCTTGTGGCAGTTAGTGATCCAAGAAAGGGTGGTTTCCCTGCTGGCTTTTGA	1779	0.4345	MASLPSSTAAAVILWHAIVFLVVSNLAPAASSLDDATNGHTKQRNEVIDAYHGAVATDDRRCSRIGMNALHDGGHAVDAAVAAALCLGVVSPASSGLGGGAFMLLRLADGVAKAFDMRETAPILASKNMYGGNTTLKAKGGLSVAVPGELAGLHKVWKQHGKLPWQRLVKPAEILASRGFKISPYLRMQMERTESDILNDPGLRSVFAPNGELLKAGDICYNKKLAHTLNTISKYGPQAFYGGFIGLNLVRDVHKAGGILTIEDLKRYTVKQKVPISTDVLGLKILGMPPPSGGPPMMLLLNILAQYELPSGLSGALGIHREIEALKHVFAVRMNLGDPDFVNVTGIVSDMLSRKFAQVLKKDINDNRTFGPSHYGGRWNQINDHGTSHVSIIDVERNAISMTTTVNEYFGSKILSTSTGIVLNNEMDDFSMPRNVSKDVPPPAPANFIMPGKRPLSSMSPTIALKDGKLKAVVGASGGPMIIGATSEVLLNHFVKGMDPFSSVTAPRVYHQLIPNIVNYENWTTVSGDHIELPADIREALRSKGHVLEGLAGGSVCQFIVLDNVESSGRNKEIEKLVAVSDPRKGGFPAGF.	593

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca6g01980	592	PRINTS	Gamma-glutamyltranspeptidase signature	475	492	-	-
	Seca6g01980	592	PRINTS	Gamma-glutamyltranspeptidase signature	143	161	-	-
	Seca6g01980	592	PRINTS	Gamma-glutamyltranspeptidase signature	288	307	-	-
	Seca6g01980	592	PRINTS	Gamma-glutamyltranspeptidase signature	161	180	-	-
	Seca6g01980	592	PRINTS	Gamma-glutamyltranspeptidase signature	75	100	-	-
	Seca6g01980	592	PRINTS	Gamma-glutamyltranspeptidase signature	411	429	-	-
	Seca6g01980	592	PRINTS	Gamma-glutamyltranspeptidase signature	259	275	-	-
	Seca6g01980	592	PRINTS	Gamma-glutamyltranspeptidase signature	387	405	-	-
	Seca6g01980	592	PRINTS	Gamma-glutamyltranspeptidase signature	451	466	-	-
	Seca6g01980	592	PANTHER	GAMMA GLUTAMYL TRANSPEPTIDASE	10	592	IPR000101	GO:0006751\|GO:0036374
	Seca6g01980	592	SUPERFAMILY	N-terminal nucleophile aminohydrolases (Ntn hydrolases)	47	592	IPR029055	-
	Seca6g01980	592	Pfam	Gamma-glutamyltranspeptidase	68	587	-	-
	Seca6g01980	592	NCBIfam	gamma-glutamyltransferase	55	529	IPR000101	GO:0006751\|GO:0036374
	Seca6g01980	592	FunFam	Gamma-glutamyltransferase 5 isoform 1	275	379	-	-
	Seca6g01980	592	Gene3D	-	275	379	IPR043138	-
	Seca6g01980	592	FunFam	Glutathione hydrolase 1	382	592	-	-
	Seca6g01980	592	Gene3D	-	382	592	IPR043137	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca6g01980	Seca-Chr6	78717929	78723499	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca6g01980	38	592	Miscellaneous Gene Families	AT4G39640	65.950	0.0	743

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca6g01980	K18592		-	gmx:100797040	928.317