Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01957 ATGAAGATGCGGTGGTGGTTTTTGCTTCTGTTCTTCTTTTCGACGGCAATGGCTCACGCAATGCCGGTTCCGACCACCTTTTCCGCGAGGCTGGTTCACCGGTTCTCCGAAGAAATGAAACCGGTTCGGGCTCAGACCGGTTCTTGGCCGGACCGGCGGAGCATGCGCTACTACCAGATGCTTCTCAACAGCGACTTTCTCAGGCACAAGATCCACCTCGGAGGCGCTCGCCACCAGCTACTGTTCCCTTCTCACGGTAGCAAAACGATGTCGTTTGGTAACGACTTTGGCTGGTTACATTACACGTGGATTGATATAGGCACACCGAGTACTTCGTTTCTTGTGGCGTTGGATGCAGGGAGTGATCTCCTTTGGGTTCCGTGCGATTGCATTCAGTGTGCTCCTTTGTCTTCAAGTTACTATTCCAATTTGGATAGAGATCTGAATGAGTATAGTCCATCTCGTTCGTTATCCAGCAAGCATCTATCTTGTAGCCATCGGTTATGTGATATGGGTCCAAATTGTAAAAGTTCCAAACAGCAGTGTCCGTACATGGTCAATTACTTATCAGAGAATACATCAAGTTCTGGATTGTTAGTTGAAGACATATTGCATCTTCAATCAGGCGATGGTGGATCTAACTCTTCTGTGCAGGCTTCAGTTGTTATCGGGTGTGGTATGAAGCAAAGTGGTGGTTATTTGGATGGGGTTGCCCCAGATGGTCTCATGGGTTTGGGACCTGGGGAGAGTTCAGTTCCAAGTTTTCTTGCTAAAGCAGGATTAATCCATGATTCTTTTTCCTTGTGCTTTAATGAAGATGATTCTGGTAGAATATTTTTTGGGGACCAAGGATCAACCATCCAGCAGTCTACTTCATTCTTGCCGTTGGATGGAACATTTTCAACCTACATTATTGGAGTGGAGGCATGCTGTATCGGGAATTCCTGTCCTAAGATGACAAGCTTTAAGGCACAAGTTGATAGTGGAACATCATTTACATTTCTTCCCGGTCATGCATATGGAGCAATAGTTGAGGAGTTTGATAAACAAGTAAATGCTTCAAGATCTAGCTTTGAAGGATCTCCTTGGGAATACTGTTATACATCCAGTTCACAACAGTTGCCAAAGGTTCCCAGCTTAACACTCATGTTCCAACAGAATAACAGTTTTGTGGTCTATAATCCCATGTTTGCATTCTATGACAATCAGGGAATTATTGGATTTTGTTTAGCCATACAGCCAGCCGAAGGGGATATGGGAACAATTGGACAGAACTTCATGACGGGATACCGGTTGGTATTTGATAGGGAAAACAAGAAGCTAGCATGGTCACCCTCAAATTGTGAGTCATTTTACTTCTCAATGAAACATGTACTAATCTTTGGGTATATCCTCTTGTCATGTGCACCCAAAGATTAA 1419 0.444 MKMRWWFLLLFFFSTAMAHAMPVPTTFSARLVHRFSEEMKPVRAQTGSWPDRRSMRYYQMLLNSDFLRHKIHLGGARHQLLFPSHGSKTMSFGNDFGWLHYTWIDIGTPSTSFLVALDAGSDLLWVPCDCIQCAPLSSSYYSNLDRDLNEYSPSRSLSSKHLSCSHRLCDMGPNCKSSKQQCPYMVNYLSENTSSSGLLVEDILHLQSGDGGSNSSVQASVVIGCGMKQSGGYLDGVAPDGLMGLGPGESSVPSFLAKAGLIHDSFSLCFNEDDSGRIFFGDQGSTIQQSTSFLPLDGTFSTYIIGVEACCIGNSCPKMTSFKAQVDSGTSFTFLPGHAYGAIVEEFDKQVNASRSSFEGSPWEYCYTSSSQQLPKVPSLTLMFQQNNSFVVYNPMFAFYDNQGIIGFCLAIQPAEGDMGTIGQNFMTGYRLVFDRENKKLAWSPSNCESFYFSMKHVLIFGYILLSCAPKD. 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01957 472 Gene3D Acid Proteases 94 281 IPR021109 -
Seca6g01957 472 FunFam Aspartyl protease family protein 1 86 282 - -
Seca6g01957 472 ProSiteProfiles Peptidase family A1 domain profile. 100 444 IPR033121 -
Seca6g01957 472 PANTHER ASPARTYL PROTEASES 8 441 IPR001461 GO:0004190|GO:0006508
Seca6g01957 472 Pfam Xylanase inhibitor C-terminal 323 444 IPR032799 -
Seca6g01957 472 Pfam Xylanase inhibitor N-terminal 101 282 IPR032861 -
Seca6g01957 472 PRINTS Pepsin (A1) aspartic protease family signature 106 126 IPR001461 GO:0004190|GO:0006508
Seca6g01957 472 PRINTS Pepsin (A1) aspartic protease family signature 420 435 IPR001461 GO:0004190|GO:0006508
Seca6g01957 472 PRINTS Pepsin (A1) aspartic protease family signature 324 335 IPR001461 GO:0004190|GO:0006508
Seca6g01957 472 SUPERFAMILY Acid proteases 95 448 IPR021109 -
Seca6g01957 472 Gene3D Acid Proteases 283 450 IPR021109 -
Seca6g01957 472 FunFam Aspartyl protease family protein 1 285 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01957 Seca-Chr6 77956124 77960634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01957 93 451 Miscellaneous Gene Families AT1G44130 26.110 8.12e-23 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01957 - - gmx:100782209 783.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01957 6 77956124 77960634 Seca6g01957 6 77956124 77960634 ECH