Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01955 ATGGAATCGGAATCTCCCAGATCCAATTCCGAAACGGACCCGCTCCTGAATCCTTTCGACGAGCTGTGCCACGACCTCGCTTCCCTCCAAGACCTAGCGAGCCGCGGCGCGTGGCGCTCCATCATCGACAAGGTCTCACGTGCCAGAGCCCTCTCTCTCCTCCACAAACCCCACGACCATCTCACCTACCTCGCCTTCAACGCCCTCGCCTTCACAAAACTACGTCGTTTCAATGAAGCTTCCGCCGAACTGGACTCAGTCGAAGACCTCGACAGTTCTCACTACAGGTACGAAACCTACCCGAAAATCTACCCCAGTCGGGTCGGATCCATGGTCCCTTTCTCTCTCCGTTGGCTCTATGCCCTAATTCCCATCAAATTGGGTCACCGCCAGCAAGGCATGGACCGATTATACCGTCTCCTCGATTTCGTGCGCGAGAAGATTAAGGACAAGGAAAATAACAACCTTGACGTTTCTCTTAGTATGTGGAGAAAGAGAGAGGTTTTTATCGTTAATTGCTTAATAGGACACCATTTGAGTCACAAAGAGTTTGGTGTGTGTTTGAGTTTGATGAAGGACCTGCTTTCTCGCGATCCTTCCGATCCTTTGTTGATTTCGCAATTGGGATACATCCAATTGCAAACTGGTGACTTGGAAGGTGCGAAAGTTTCGTTTTTGAAATTGGAGGGTGAGGGGAAGAACAATGGGTCATTGAGTGAGGTTGAGTATAAGAATCTTGTGAACCGAAACAAGGCCTTAGTGTATATGGTTGGGAAGGATTATGTATCTGCAGTGAGAGAGTATGAAGAGTGCATTGAGAGGGACCCTTCGGATGTAGTAGCTGTTAACAACAAGGCTCTCTGTTTGATGTATCTGCGAGACTTGTCTGATTCAATAAAGGTGCTGGAAAATGCGCTTGAGAGAGTTCCCACTGTGGCTCTGAACGAGACCCTTGTTGTCAATTTGTGTAGTATGTACGAGTTGGCCTATGTTAATCATTCTGATATCAAGAGAACGCTTAGTAGTTGGATTGCTCGTGTTGCTCCTGATGACTTTGATGCAACCTGTACTCGTACATGA 1080 0.4787 MESESPRSNSETDPLLNPFDELCHDLASLQDLASRGAWRSIIDKVSRARALSLLHKPHDHLTYLAFNALAFTKLRRFNEASAELDSVEDLDSSHYRYETYPKIYPSRVGSMVPFSLRWLYALIPIKLGHRQQGMDRLYRLLDFVREKIKDKENNNLDVSLSMWRKREVFIVNCLIGHHLSHKEFGVCLSLMKDLLSRDPSDPLLISQLGYIQLQTGDLEGAKVSFLKLEGEGKNNGSLSEVEYKNLVNRNKALVYMVGKDYVSAVREYEECIERDPSDVVAVNNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIARVAPDDFDATCTRT. 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01955 359 Gene3D Tetratricopeptide repeat domain 30 334 IPR011990 GO:0005515
Seca6g01955 359 Coils Coil 134 154 - -
Seca6g01955 359 SMART tpr_5 202 235 IPR019734 GO:0005515
Seca6g01955 359 SMART tpr_5 245 278 IPR019734 GO:0005515
Seca6g01955 359 SMART tpr_5 279 312 IPR019734 GO:0005515
Seca6g01955 359 PANTHER D-ALANYL-D-ALANINE CARBOXYPEPTIDASE 13 357 - -
Seca6g01955 359 SUPERFAMILY TPR-like 192 313 IPR011990 GO:0005515
Seca6g01955 359 FunFam Trafficking protein particle complex subunit 12 170 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01955 Seca-Chr6 77938504 77939583 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01955 K20309 - gmx:100779691 617.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01955 6 77938504 77939583 Seca6g01955 6 77938504 77939583 ECH