Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01933 ATGGGAGACATTTCACCAGAGAGGAAATCCGGTTGTGGCTTGTTATCAACAGTGTTTGGGCGACGCAATCTTTGGTCACGAAGAACCTCCTCTGTGGGTTCTTCTCCCATAGCCAACAACGCAAATGACTCAAAACGACGTCGTGGTGGCTCTAATGATGTCGTTTCGTTTGATGCAGTTTCTCCATCAAATGCTACAAACACATCATCTCGTTCAGCATCCAAGTCTTCATCCTATTCCTCTTCTTCAAATAATCCCCAGAGGCCGAACCAAAACCCCCAAAGGAAACAACACCCTAACGAAACAACAATGGCACATGGCTATGTCAACCAAGGAAGAAGGGTTCCAAAAGAAGCTCTTGGAATTTCTGGTGAGCTTGAAAGCATGATCAATGATCACCAAAAATCCAAGGGAAGCAGCACTCTTGTTCGAGCTTCTTCTAGCAATGTGATGTTGTTTGGTAATTTAGGTAACATCAGACAAGGGGGAGGATCAGGTAACAATTCTAATAGCGCAATGGATTATTACAATGTTGGTAATGGGGGATACACGAAAGATACGATGGGAAATGTGGGTAATAGGAGTAATGAGGCTAAACAAACCAAGGAACAACAAAATGGTTCGCTGTGTAGGGCTGTGTCTACTAGAATGGATCCTGAGCAATTGAAGATATTAGGGAATGAGGATTATAAGAATGGAAGATTTGCAGAGGCCTTGGCTCTTTATGATGCTGCTATTGCAATTGACCCCAATAAGGCTTCTTATAGGAGTAACAAAAGTGCTGCATTAACTGCTCTTGGTAGGCTTCTTGAGGCTGTCTTTGAATGCAGAGAAGCCATTCGGATTGAGCCTCATTATAACAGAGCTCATAATCGGTTGGGAAATTTGCACTTGAGATTAGGAGAAACAGATAAGGCCCTTTATCATTATAAACAAGCAGGACCAGAGGCCGATCCTGATGAGATTGCTAAAGTGAAGGTTCTCCAGGTCCATTTAAATAAGTGCACCGAGGCTCGTAGGTCAGGAGATTGGAATACATTGATCATTGAGACCAACAAGGCTATATCATCAGGTGCAGATTCTGCTCCACAGATATATGCACTGCAAGCCGAAGCCTTACTAAAGCTTCGTAGGCACCAAGATGCAGACAAAGTAATGTCAAAGTGTCCTCAATTTGATGTTGATGAGTGTACTAAGTTCTTTGGACCTATTGGTAATGCAAATTTGTTGGCTACACGTGCTCATGTTAATTTGGCTACTGGCAAAAATTGTGTTGGTAGATTTGAAGATGCTTTAGGGGCATCACAGAAAGCAGCGAGGTTGGACTCTAATAACAGGGAGGCTAACAAGGTACTGAGAAAGGCTCGAGCTGTCACAGCTGCTAGAGCTAAGGGAAATGAGCTTTTCAAGGCATCAAAATTTTCTGAGGCTTGTGTTGTCTATGGAGAGGGTCTTGAGTATGATCCTTATAACTCTGTTTTACAATGCAACCGAGCTGCTTGTAGATCAAAACTAGGCCAATTTGAGAGAGCTTTGGATGATTGCACTGCTGCACTTAACTTACGCCCATCTTACAGCAAAGCCAGATTGAGAAGGGCTGATTGTAATGCAAAGTTGGAAAGATGGGAAGCCTCAGTACAAGACTATGAAATCTTGCTTAAAGAGACACCAGAAGATGAGGAAGTAAAGCATGCTTTGTTAGAGGCCCAATCACAGCTTAAGAAACAGCGAGGTGAAGAAATGACATGA 1749 0.4294 MGDISPERKSGCGLLSTVFGRRNLWSRRTSSVGSSPIANNANDSKRRRGGSNDVVSFDAVSPSNATNTSSRSASKSSSYSSSSNNPQRPNQNPQRKQHPNETTMAHGYVNQGRRVPKEALGISGELESMINDHQKSKGSSTLVRASSSNVMLFGNLGNIRQGGGSGNNSNSAMDYYNVGNGGYTKDTMGNVGNRSNEAKQTKEQQNGSLCRAVSTRMDPEQLKILGNEDYKNGRFAEALALYDAAIAIDPNKASYRSNKSAALTALGRLLEAVFECREAIRIEPHYNRAHNRLGNLHLRLGETDKALYHYKQAGPEADPDEIAKVKVLQVHLNKCTEARRSGDWNTLIIETNKAISSGADSAPQIYALQAEALLKLRRHQDADKVMSKCPQFDVDECTKFFGPIGNANLLATRAHVNLATGKNCVGRFEDALGASQKAARLDSNNREANKVLRKARAVTAARAKGNELFKASKFSEACVVYGEGLEYDPYNSVLQCNRAACRSKLGQFERALDDCTAALNLRPSYSKARLRRADCNAKLERWEASVQDYEILLKETPEDEEVKHALLEAQSQLKKQRGEEMT. 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01933 582 Gene3D Tetratricopeptide repeat domain 217 578 IPR011990 GO:0005515
Seca6g01933 582 MobiDBLite consensus disorder prediction 22 45 - -
Seca6g01933 582 Pfam Tetratricopeptide repeat 504 559 - -
Seca6g01933 582 Pfam Tetratricopeptide repeat 222 251 IPR013105 -
Seca6g01933 582 MobiDBLite consensus disorder prediction 56 100 - -
Seca6g01933 582 MobiDBLite consensus disorder prediction 18 100 - -
Seca6g01933 582 Pfam Tetratricopeptide repeat 289 319 IPR019734 GO:0005515
Seca6g01933 582 ProSiteProfiles TPR repeat profile. 219 252 IPR019734 GO:0005515
Seca6g01933 582 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 7 581 IPR044534 -
Seca6g01933 582 SUPERFAMILY TPR-like 219 448 IPR011990 GO:0005515
Seca6g01933 582 SUPERFAMILY TPR-like 460 576 IPR011990 GO:0005515
Seca6g01933 582 SMART tpr_5 253 286 IPR019734 GO:0005515
Seca6g01933 582 SMART tpr_5 458 491 IPR019734 GO:0005515
Seca6g01933 582 SMART tpr_5 287 320 IPR019734 GO:0005515
Seca6g01933 582 SMART tpr_5 412 445 IPR019734 GO:0005515
Seca6g01933 582 SMART tpr_5 526 559 IPR019734 GO:0005515
Seca6g01933 582 SMART tpr_5 219 252 IPR019734 GO:0005515
Seca6g01933 582 SMART tpr_5 492 525 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01933 Seca-Chr6 77384276 77387865 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01933 - - gmx:100811282 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01933 6 77384276 77387865 Seca6g01933 6 77384276 77387865 ECH