Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01924 ATGTCTTCCCTTCAGCTGTTGAAACTAACTCAGCATGGCCAGAATTTTCTGGCTTCAAGGAGGAAAGCTTTACTACTTGCATCCGGTATCTTGATTGCTGGAGGAACAGCTGCATATATGAAATCAAGGTTTAAAGTTAATAAACATGATTTATTTGGCCATTGCAATGGGCACAACAATGATAAAGAAGTCACAAAGGAGGAGGTTAAGAAGGGCACTACTACACCAAAAAATAAACAAAAGAAAGGGGGGTTGAAGTCAATTCAAGTCCTTGCTGCAATTCTTCTATCTGAGATGGGCCAATTAGGTGCAAGGGATCTTTTAGCTTTAGTTGGCATAGTGGTGCTGCGAACTGCTTTGAGCAACAGGCTAGCTAAAGTGCAAGGCTTCCTATTTCGTGCTGCTTTTCTTCGGCGTGTGCCATTGTTTTTTCGGTTGATTTCAGAAAATATTCTTTTGTGCTTCCTCTTATCAACCATTCATTCTACGTCAAAATACATAACAGGGACTTTGAGTCTGCATTTCAGAAAAATATTGACAAAGCTTATCCATTCCCACTATTTTGAGAACATGGTATATTACAAAATATCACATGTGGATGGTCGGATAACTAACCCAGAGCAAAGAATTGCCAGTGATGTGCCAAGGTTCTGTTCAGAGTTGAGTGAAATTGTACAGGATGATCTAACAGCAGTGACTGATGGACTTCTATATACTTGGCGGTTGTGTTCGTATGCTAGTCCAAAATATGTCTTCTGGATATTGGCCTATGTACTTGGAGCTGGGGCCACAATCAGAAACTTCTCTCCTTCGTTTGGGAAACTTATGTCCACAGAGCAGCAACTGGAAGGAGAGTATCGACAGCTTCATTCACGATTGAGAACTCACTCAGAAAGTATAGCATTTTACGGTGGAGAGAGGAGAGAAGAAGCTCATATTCAACAGAAGTTTAAGAACTTGGTTAAGCACATGAATAGAGTGCTACATGACCATTGGTGGTTTGGCATGATTCAGGACTTTTTATTGAAGTATCTTGGTGCAACTGTTGCTGTTATTTTAATTATTGAACCTTTCTTTTCTGGCCATCTAAGGCCCGACAGTTCAACTTTAGGGCGTGCAGAGATGTTAAGCAATCTAAGATATCATACTAGTGTCATAATTTCCTTATTTCAGTCTCTAGGAACTCTTTCTATCAGTGCAAGACGACTCAATCGTCTCAGTGGGTATGCTGACCGTATTTATGAGTTAATGGCTGTATCAAGGGAGCTGAGCTTGGTGGATGAGAAATCTCCCCTGCAAAGAAAAGGAAGTAGAAATTGCATAAGTGAGGCTAACTACATTGAATTTTCTGGTGTTGTGACTCCCACTGGTAATGTCTTGGTGGATGATCTGACCCTCAAGGTTGAGCCAGGATCTAATCTATTGATAACAGGTCCTAATGGCAGTGGAAAGAGCTCACTTTTCCGGGTTCTAGGCGGTCTTTGGCCATTGATATCTGGACATATTGTGAAACCCGGCATTGGCTCTGATCTTAATAAGGAGATTTTCTATGTGCCACAAAGACCATACACTGCTGTAGGAACACTTCGTGATCAGTTAATTTATCCTCTTACTGCAGATCAAGAGGTTGAACCACTCACAGATCATGGGATGGTGGAGCTATTGAAAAATGTTGACCTTGAATACCTGTTGGACCGTTACCTGCCTGAAAAAGAGGTGAACTGGGGTGATGAACTTTCGTTGGGTGAGCAACAGAGGTTGGGCATGGCTAGACTTTTCTACCATAAGCCTAAATTTGCGATTCTTGATGAGTGCACAAGTGCTGTCACTACTGATATGGAAGAACGGTTTTGTGCTAAAGTTCGGGCCATGGGAACATCATGCATTACCATATCACATCGTCCAGCATTGGTTGCATTCCATGATGTGGTTTTGTCCTTAGATGGTGAGGGAGGATGGAGTGTTCATTATAGAAGGGAGGACTCTTCTACTGAAATGGGGATTGATACAATGAAGGCATCAGAAACAAAACGACAGAGTGATGCAAAAGCAGTTCAACGAGCATTTGCTTTGAGCAAAAAGGATTCTGCATTCTCCAATTCAAAGGCACAGCCCTATATTGCAGAGGTGGTATCTTCATCTCCATCTATGAATCATGATATTTCACCTTCTGCTGTTCCCCAACTCCATGGTAATACAAGAGTATTGCCACTGAGAGTAGCTGCTATGTGCAAAGTATTGGTACCCACTGTACTTGATAAACAAGGTGCACAACTGCTTGCTGTTGCTTTTCTTGTTGTTTCTAGAACATGGGTCTCAGATCGTATTGCATCACTAAATGGTACCACTGTGAAGTTTGTTTTGGAGCAGGATAAAGCTGCCTTTATTCGTTTAATTGGTATAAGTGTTCTTCAAAGTGCTGCATCTTCTTTCATTGCACCTACTATAAGACACTTGACAGCCAGGCTGGCTCTTGGGTGGCGGATTCGTTTGACACAACATCTACTCAAGAACTACTTGAGAAGAAATGCGTTCTACAAGGTCTTCCACATGGCAAGCAAAAATATTGATGCAGATCAGAGGATAACACAAGACTTGGAGAAGTTAACGACAGACTTGTCAGGACTGGTCACTGGAATGGTCAAGCCATCCGTGGATATTTTGTGGTTCACATGGAGAATGAAGCTGTTAACTGGTCAGAGGGGAGTTGCCATACTCTATGCTTACATGTTACTTGGCCTGGGATTTTTAAGAACTGCTACTCCTGATTTTGGTGATTTGATAAGCCAAGAACAACAACTTGAAGGAACCTTTAGGTTCATGCATGAAAGACTCTGTACTCATGCTGAATCTGTTGCTTTCTTTGGAGGCGGTGCTCGAGAAAAAGCTATGGTTGAATCAAGATTCAGAGAGCTTCTCACCCACTCCAAGTACCTTTTAAAGAAGAAGTGGCTGTTTGGTATACTGGATGATTTTATCACAAAGCAACTCCCTCATAATGTGACTTGGTTGCTGAGCTTGTTGTATGCTATAGAACATAAGGGAGACCGCGCATCAATAAGTACTCAGGGTGAGCTGGCACATGCATTGAGGTTCTTAGCATCTGTTGTTTCTCAAAGCTTTTTAGCTTTTGGTGACATTCTTGAATTGCATAGAAAGCTTGTAGAGCTTTCTGGTGGTATTAATAGGATTTTTGAGCTTGAAGAGTTCCTGGATGCAGCACAATCTGGAGACTTCACCAATAGTGGTGCTATACCTTCAGTGAGGGATTATCATTCTAAAGATGTTATTTCCTTTTCTAAGGTTGATATTGTGACCCCTGCTCAGAAGATGTTAGCCAGGGAGTTGACATGTGACATTGAGCTAGGGAGAAGCCTGCTTGTTACTGGTTGGTATAGTTGTTATTTTAGTATATTTTCCCTTTTAGATGAGGGAATTCTATTCTGTGTTTTAAAAGGTCCAAACGGAAGTGGAAAAAGCTCCATTTTCAGAGTTCTTAGAGGACTTTGGCCAATTGCTAGTGGAAGACTCTCTAGACCATCTGAAGATGTGGATCAAGATCAAGAGGCTGGATCAGGTTGTGGAATCTTTTATGTTCCTCAGCGGCCATATACATGCTTGGGAACTCTACGGGATCAAATTATATACCCCTTGTCGCGTGAAGAAGCAGAGTCTAGAGCATTGAGGATGTACGGAAAAGGTGAAAAACATCCTGACACTGGAAATCTGTTGGACACGCACTTGCAAGTTATCCTAGAGAATGTTAGGTTGAATTATCTTCTAGAAAGGGACAAAAGCGGCTGGGATGCAAATCTAAACTGGGAAGACACTCTCTCTCTTGGAGAACAGCAGAGATTAGGCATGGCACGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACCAATGCAACTAGTGTTGATGTCGAAGAACACCTATATGGGCTTGCGAAGAAAATGGGAATCACAGTTGTTACTTCCTCACAACGTCCTGCTTTAATACCATTTCATTCCCTGGAATTGCGGCTGATTGATGGTGAGGGTAATTGGGAACTTCGTTTGATCAAGCAATGA 4083 0.4193 MSSLQLLKLTQHGQNFLASRRKALLLASGILIAGGTAAYMKSRFKVNKHDLFGHCNGHNNDKEVTKEEVKKGTTTPKNKQKKGGLKSIQVLAAILLSEMGQLGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFRLISENILLCFLLSTIHSTSKYITGTLSLHFRKILTKLIHSHYFENMVYYKISHVDGRITNPEQRIASDVPRFCSELSEIVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGATIRNFSPSFGKLMSTEQQLEGEYRQLHSRLRTHSESIAFYGGERREEAHIQQKFKNLVKHMNRVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFSGHLRPDSSTLGRAEMLSNLRYHTSVIISLFQSLGTLSISARRLNRLSGYADRIYELMAVSRELSLVDEKSPLQRKGSRNCISEANYIEFSGVVTPTGNVLVDDLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLISGHIVKPGIGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTADQEVEPLTDHGMVELLKNVDLEYLLDRYLPEKEVNWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHYRREDSSTEMGIDTMKASETKRQSDAKAVQRAFALSKKDSAFSNSKAQPYIAEVVSSSPSMNHDISPSAVPQLHGNTRVLPLRVAAMCKVLVPTVLDKQGAQLLAVAFLVVSRTWVSDRIASLNGTTVKFVLEQDKAAFIRLIGISVLQSAASSFIAPTIRHLTARLALGWRIRLTQHLLKNYLRRNAFYKVFHMASKNIDADQRITQDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKLLTGQRGVAILYAYMLLGLGFLRTATPDFGDLISQEQQLEGTFRFMHERLCTHAESVAFFGGGAREKAMVESRFRELLTHSKYLLKKKWLFGILDDFITKQLPHNVTWLLSLLYAIEHKGDRASISTQGELAHALRFLASVVSQSFLAFGDILELHRKLVELSGGINRIFELEEFLDAAQSGDFTNSGAIPSVRDYHSKDVISFSKVDIVTPAQKMLARELTCDIELGRSLLVTGWYSCYFSIFSLLDEGILFCVLKGPNGSGKSSIFRVLRGLWPIASGRLSRPSEDVDQDQEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAESRALRMYGKGEKHPDTGNLLDTHLQVILENVRLNYLLERDKSGWDANLNWEDTLSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEHLYGLAKKMGITVVTSSQRPALIPFHSLELRLIDGEGNWELRLIKQ. 1361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01924 1360 SUPERFAMILY ABC transporter transmembrane region 144 417 IPR036640 GO:0005524|GO:0016020
Seca6g01924 1360 Gene3D - 436 704 IPR027417 -
Seca6g01924 1360 Gene3D ABC transporter type 1, transmembrane domain 104 418 IPR036640 GO:0005524|GO:0016020
Seca6g01924 1360 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 446 649 IPR027417 -
Seca6g01924 1360 CDD ABCD_peroxisomal_ALDP 447 653 - -
Seca6g01924 1360 ProSitePatterns ABC transporters family signature. 579 593 IPR017871 GO:0005524|GO:0016887
Seca6g01924 1360 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 441 676 IPR003439 GO:0005524
Seca6g01924 1360 Pfam ABC transporter 1150 1306 IPR003439 GO:0005524
Seca6g01924 1360 ProSitePatterns ABC transporters family signature. 1278 1292 IPR017871 GO:0005524|GO:0016887
Seca6g01924 1360 SUPERFAMILY ABC transporter transmembrane region 759 1066 IPR036640 GO:0005524|GO:0016020
Seca6g01924 1360 Pfam ABC transporter transmembrane region 2 744 1008 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca6g01924 1360 Pfam ABC transporter transmembrane region 2 91 359 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca6g01924 1360 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1149 1349 IPR027417 -
Seca6g01924 1360 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 59 655 - -
Seca6g01924 1360 CDD ABCD_peroxisomal_ALDP 1097 1353 - -
Seca6g01924 1360 Pfam ABC transporter 462 607 IPR003439 GO:0005524
Seca6g01924 1360 SMART AAA_5 470 649 IPR003593 GO:0016887
Seca6g01924 1360 SMART AAA_5 1145 1348 IPR003593 GO:0016887
Seca6g01924 1360 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 151 341 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca6g01924 1360 Gene3D - 1089 1350 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01924 Seca-Chr6 77203235 77223352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01924 1 1360 Acyl Lipid Metabolism Gene Families AT4G39850 76.204 0.0 2127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01924 K25819 - gmx:100813765 2391.69