Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01809 ATGAATCCTCTGTGCTGCATTGCTCCGGTTTCGATCGATCGGGACCGGACCAACCCTGTGGTGGCCAAATCGCCCGGTCAGTGTCAGTTAGGGCTCGATTCAACCATCAGAACTGTGAACAGTGCTTCCAAATCGAGCTTCTCCACTCAGGACTCGTCGTCTCACGGTGGTGCCGATTCAGTTAAGGCCTCCTCCGCCGCGGTGAATCACAATGAAGATGACGCGGTCCACGAGCCTCGGGATTCCAAGGTGTTCGCCGGCGGCAATGGCGGCGGCGTAGCCGGAAGTGTGGCTGGGATACTGTACAAGTGGGTGAATTACGGGAAGGGTTGGAGGTCGAGGTGGTTCGTGCTGGAAGATGGCGTGCTTTCGTATTATAAGATTCATGGACCGGACAAGATCTTGATGAGTCCCGCTAGGGATAGGAGTGTTAGGGTGATCGGCGAAGAGTCATCGAAGTATATGAAAAAGGCGAATTGGAATCTGAATCGAGCTACTGGAGGAGGAGGAGGAGGAGGAGCAACCAAGCAATGCAAGCCCTTCGGTGAGATACATTTGAAGGTTTCTTCAGTTCGTTCCAGCAAATCTGATGACAAGCGGCTTTCCATATTTACCGGGACAAAAACTCTTCACTTGCGGTGTGTATCTAGAGAAGACAGAGCAATGTGGATTGAGGCCCTACAGTCTGCAAAAGATCTTTTTCCTAGAGCTCTAACAAGTAGTGATCTTGCAACTTCAGAAGATATTGTAGTTTCAACAGAGAAGCTCCGATCACGATTGTCACAGGAAGGCATAAGTGAAGAAATCATTAATGACTGTGAGTCTATTATGCTCTCTGAAGTCTCATATCTTCAAGGCAAGTTGAAGTATCTTCAGCAGAAACATGTTATGTTGCTGGACACCTTAAAACAACTGGAGACGGAGAAAATAGAGTTGGAAACTACTGTAGTGGATGAAACAAAGGAACGTGAGTCATATTGTGGACAAGGGAATAGAAGATTTAGTGATTTCTATTCTGTTATGTCGGAGGGCAGTGCTACTGATTCAGTAGCAGATAATGAAAGTCAAGATGGAGCAGATGCTGAAACAGATGATGATGATGGAACATATTTTGATACAAATGAGATTTTGTATTCAGATGCCTTAAGAAGTGCTTCCTACCGAAGTAGGGAAGGTATGGGAAATGCCAGTATACTTGATAGAGATTATATTCTTTATGATGGTTTGCATGGATTTGAGAAGGAGATCAAAGATATAAGTTATCCATATGTCAAAAGAAGGGATAACTTACCAGAGCCAAAAGAGAAAGAGAAGCCTGTTGGCTTGTGGTCAATTATTAAAGACAATATTGGGAAGGATCTTTCTGGAGTCTGTCTCCCTGTTTATTTTAATGAACCACTCTCCTCGTTGCAAAAGTGCTTTGAAGACCTAGAGTATTCATACCTGGTTGATAGAGCACTGGAGTGGGGAAAGCAGGTCAGGTCCTCAGCTGTGCTTTCTTTTGTCACAAGATGTGAATCAGGGTTTTGCATGGTGCAGGGGAATGATTTGATGAGAATTCTAAATATTGCAGCTTTTGCTGTGTCTAGCTATGCGTCAACTGAAGGTAGACAGTGTAAACCTTTCAATCCTCTACTTGGGGAGACATATGAAGCCGACTATCCAGATAAAGGACTTAAGTTTTTCTCAGAGAAGGTTAGTCATCATCCAATGATTGTTGCTTGTCACTGTGAGGGAAGAGGATGGAAGTTCTGGGCAGACTCCAATTTGAAAGGAAAATTCTGGGGGCGTTCTATTCAGTTAGATCCTGTAGGTGTCCTCACCTTACAGTTTGAGGATGGTGAAACATTTCAGTGGAGCAAGGTCACGACTTCCATATACAATATCATACTAGGTAAAATTTATTGTGACCACTATGGTACCATGCACATCAAGGGCAGTGGCAACTACTCTTGCAAACTGAAGTTCAAAGAGCAATCTATCATAGACCGAAATCCACATCAGGTCCATGGGTTTGTTCAAGACAACAGAACTGGAGAGAAGGTAGCCATGTTAATTGGGAAGTGGGATGAAGCAATGTACTATGTACTTGGGAATCCAACTACAAAGCCAAAAGGTTATGATCCAATGACAGAGGCTGCATTATTATGGGAAAGGGACAACTATGTTTCGAAGACAAGATACAACCTCTCTCCTTTTGCAATTTCCTTGAATGAAATAACGCCTGGTTTATGTGAGAAGTTGCCCCCAACTGACTCAAGGTTGAGACCAGATCAAAGACATTTAGAAAATGGAGAATATGAATTGGCAAATGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACAGGCAAGAAAGATGCAAGAAAGAGGATGGCAGCCTAGATGGTTTAAAAAGGATGAGGATGGTTGTTACCGATATATAGGTGGCTATTGGGAAGCAAGAGAAAAGAATAATTGGGATGGAATCCCTGATATATTTGGACAGAGTTGTGATTTGCCTTCGTGTTCTGAAGAGATTGTTTCCTACTGA 2532 0.436 MNPLCCIAPVSIDRDRTNPVVAKSPGQCQLGLDSTIRTVNSASKSSFSTQDSSSHGGADSVKASSAAVNHNEDDAVHEPRDSKVFAGGNGGGVAGSVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDRSVRVIGEESSKYMKKANWNLNRATGGGGGGGATKQCKPFGEIHLKVSSVRSSKSDDKRLSIFTGTKTLHLRCVSREDRAMWIEALQSAKDLFPRALTSSDLATSEDIVVSTEKLRSRLSQEGISEEIINDCESIMLSEVSYLQGKLKYLQQKHVMLLDTLKQLETEKIELETTVVDETKERESYCGQGNRRFSDFYSVMSEGSATDSVADNESQDGADAETDDDDGTYFDTNEILYSDALRSASYRSREGMGNASILDRDYILYDGLHGFEKEIKDISYPYVKRRDNLPEPKEKEKPVGLWSIIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDRALEWGKQVRSSAVLSFVTRCESGFCMVQGNDLMRILNIAAFAVSSYASTEGRQCKPFNPLLGETYEADYPDKGLKFFSEKVSHHPMIVACHCEGRGWKFWADSNLKGKFWGRSIQLDPVGVLTLQFEDGETFQWSKVTTSIYNIILGKIYCDHYGTMHIKGSGNYSCKLKFKEQSIIDRNPHQVHGFVQDNRTGEKVAMLIGKWDEAMYYVLGNPTTKPKGYDPMTEAALLWERDNYVSKTRYNLSPFAISLNEITPGLCEKLPPTDSRLRPDQRHLENGEYELANAEKLRLEQLQRQARKMQERGWQPRWFKKDEDGCYRYIGGYWEAREKNNWDGIPDIFGQSCDLPSCSEEIVSY. 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01809 843 FunFam Oxysterol-binding protein-related protein 2A 759 829 - -
Seca6g01809 843 Gene3D - 548 714 - -
Seca6g01809 843 MobiDBLite consensus disorder prediction 355 369 - -
Seca6g01809 843 SUPERFAMILY PH domain-like 98 236 - -
Seca6g01809 843 SUPERFAMILY Oxysterol-binding protein-like 436 829 IPR037239 -
Seca6g01809 843 Gene3D - 759 822 - -
Seca6g01809 843 MobiDBLite consensus disorder prediction 43 67 - -
Seca6g01809 843 Pfam Pleckstrin homology domain 99 229 - -
Seca6g01809 843 FunFam oxysterol-binding protein-related protein 1D isoform X1 548 721 - -
Seca6g01809 843 MobiDBLite consensus disorder prediction 345 369 - -
Seca6g01809 843 Pfam Oxysterol-binding protein 442 816 IPR000648 GO:0008289
Seca6g01809 843 ProSiteProfiles PH domain profile. 94 232 IPR001849 -
Seca6g01809 843 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 97 815 IPR000648 GO:0008289
Seca6g01809 843 Gene3D - 94 234 IPR011993 -
Seca6g01809 843 MobiDBLite consensus disorder prediction 43 84 - -
Seca6g01809 843 SMART PH_update 95 234 IPR001849 -
Seca6g01809 843 Coils Coil 288 322 - -
Seca6g01809 843 Coils Coil 770 790 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01809 Seca-Chr6 74407103 74415012 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01809 K20456 - gmx:100788779 1511.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01809 6 74407103 74415012 Seca6g01809 6 74407103 74415012 ECH