Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01807 ATGGCTCTGGCTTTCGACGAGTTCGGAAGGCCCTTCATAATCCTGAAGGAACAGGAACAGAAGAGCAGGCTTAGGGGTCTCGATGCTCAGAAAGCCAACATCTCCGCCGGAAAAGCCGTCGCTCGTATTCTCCGTACCTCTCTCGGCCCCAAAGGCATGGACAAGATGCTTCAGAGCCCCGACGGCGACGTCACCATCACAAATGATGGAGCAACGATCTTGGAGCAGATGGATGTTGACAACCAGATTGCAAAGCTGATGGTTGAGCTTTCCAGGAGTCAGGATTATGAAATTGGTGATGGCACCACTGGAGTTGTTGTGATGGCTGGAGCTCTTCTCGAGCAAGCTGAGCGACTCTTGGAACGAGGAATTCATCCCATTAGGATTGCCGAGGGATATGAAATGGCATCTAGGATTGCTGTTGAAAATTTGGAGCGTATTGCGAACAAGTTTGAATTCGGAGAAGCGAATTTGGAGCCTCTGATTCAAACCTGTATGACTACCTTGTCCTCGAAAATTGTGAATCGGTGCAAGCGTAGCTTGGCTGAGATTGCTGTCAAAGCTGTTCTTGCAGTTGCTGATCTGGAGAGGAAAGATGTTAACTTAGATCTAATTAAAGTAGAAGGAAAAGTTGGTGGAAAATTGGAAGACACGGAGTTGATATATGGAATTGTTATTGACAAGGATATGAGCCATCCCCAAATGCCAAAGCAAATTGAAGATGCTAAAATTGCTATCTTGACTTGCCCCTTTGAGCCTCCAAAGCCAAAGACCAAGCATAAGGTTGATATTGATACAGTGGAGAAGTTCCAGACATTAAGGATGCAAGAACAGAAATATTTTGATGACATGGTTCAACAATGCAAGGATGTGGGTGCAACCCTTGTTATCTGCCAATGGGGTTTTGATGATGAAGCAAATCATCTCTTAATGCACAGGAACTTGCCAGCTGTTAGATGGGTTGGTGGTGTAGAGTTGGAATTGATAGCTATAGCAACAGGTGGAAGAATTGTTCCAAGGTTCCAGGAGTTAACTCCAGAAAAGTTGGGAAAGGCTGGTCTGGTTCGAGAAAAATCCTTTGGCACAACAAAAGATCGGATGCTATACATTGAGCATTGTGCAAACTCAAGGGCTGTAACCATCTTCATTCGTGGAGGTAACAAAATGATTATAGAGGAGACAAAGCGCAGCCTTCATGATGCCTTGTGTGTGGCTAGGAATCTTATCCGCAACAATTCTATTGTATATGGTGGTGGTTCAGCCGAGATTTCCTGCTCTATTGCCGTGGAGGCAGCTGCTGATAGATACCCTGGAGTAGAACAATATGCTATTAGAGCATTTGCCGATGCTTTGGAGGCTATCCCTATGGCCCTTGCTGAAAATAGTGGCCTCCAACCAATTGAAACATTATCTGCTGTGAAGTCTCAGCAAATAAAGGATAATAATCCTCACTTTGGCATTGATTGCAATGATATTGGCACTAATGACATGCGTGAGCAAAATGTCTTCGAAACTTTGATTGGAAAGCAGCAACAGCTCTTACTCGCCACCCAAGTTGTCAAGATGATATTGAAAATTGATGATGTTATTTCTCCATCTGAGTACTGA 1608 0.444 MALAFDEFGRPFIILKEQEQKSRLRGLDAQKANISAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERLLERGIHPIRIAEGYEMASRIAVENLERIANKFEFGEANLEPLIQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGKLEDTELIYGIVIDKDMSHPQMPKQIEDAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRMQEQKYFDDMVQQCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTKDRMLYIEHCANSRAVTIFIRGGNKMIIEETKRSLHDALCVARNLIRNNSIVYGGGSAEISCSIAVEAAADRYPGVEQYAIRAFADALEAIPMALAENSGLQPIETLSAVKSQQIKDNNPHFGIDCNDIGTNDMREQNVFETLIGKQQQLLLATQVVKMILKIDDVISPSEY. 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01807 535 ProSitePatterns Chaperonins TCP-1 signature 2. 66 82 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Seca6g01807 535 SUPERFAMILY GroEL equatorial domain-like 21 531 IPR027413 -
Seca6g01807 535 CDD TCP1_epsilon 6 531 IPR012718 GO:0005524|GO:0006457|GO:0051082
Seca6g01807 535 NCBIfam thermosome subunit alpha 11 531 - -
Seca6g01807 535 FunFam T-complex protein 1 subunit epsilon 377 412 - -
Seca6g01807 535 Gene3D GroEL 222 376 IPR027409 -
Seca6g01807 535 FunFam T-complex protein 1 subunitTheta, putative 413 530 - -
Seca6g01807 535 FunFam T-complex protein 1 subunit delta 33 150 - -
Seca6g01807 535 Gene3D - 37 530 IPR027413 -
Seca6g01807 535 FunFam T-complex protein 1 subunit epsilon 222 376 - -
Seca6g01807 535 SUPERFAMILY GroEL-intermediate domain like 157 412 IPR027410 -
Seca6g01807 535 Pfam TCP-1/cpn60 chaperonin family 40 531 IPR002423 GO:0005524
Seca6g01807 535 NCBIfam thermosome subunit beta 11 531 - -
Seca6g01807 535 Gene3D - 150 412 IPR027410 -
Seca6g01807 535 SUPERFAMILY GroEL apical domain-like 217 385 IPR027409 -
Seca6g01807 535 NCBIfam T-complex protein 1 subunit epsilon 3 532 IPR012718 GO:0005524|GO:0006457|GO:0051082
Seca6g01807 535 PANTHER CHAPERONIN 23 530 IPR017998 GO:0140662
Seca6g01807 535 ProSitePatterns Chaperonins TCP-1 signature 3. 94 102 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Seca6g01807 535 ProSitePatterns Chaperonins TCP-1 signature 1. 45 57 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Seca6g01807 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 64 82 IPR017998 GO:0140662
Seca6g01807 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 414 426 IPR017998 GO:0140662
Seca6g01807 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 380 402 IPR017998 GO:0140662
Seca6g01807 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 42 58 IPR017998 GO:0140662
Seca6g01807 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 94 113 IPR017998 GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01807 Seca-Chr6 74370132 74376152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01807 178 441 EF-hand Containing Proteins AT3G14270 22.183 1.33e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01807 K09497 - gmx:100817323 1023.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01807 6 74370132 74376152 Seca6g01807 6 74370132 74376152 ECH