Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01754 ATGTTCAGAAAGGTGCTGAATAAACTTCCTCGAAAGTCATCAAAAGGTTCCGAGCATCGCGAACAGAGTGGAAGTGGAAGAAGCCATGGCGTCTCCACCTCAAAAAGCAGTGTTATTGTTACACCAGGAAGCAGCAAACCCGGAAATTCTTCTCCTGCTTTGAATGCTGGTCAAAATCATGGTAACAGAGCTCCATTACCATTGTCTGTGAATGAGAATCCTAATGGGAATTTCAATTCTTATGAAGCATTGCCTTCAATTAGGGATGTTCCCAATTCTGAGAAACCGAGTTTGTTCCTGAAGAAGCTCAAGATGTGCAGTGTTGTGTTTGACTTCACTGACCCCACAAAGCATCTCAAAGAAAAGGAAATCAAGCGACAGGCTTTGGTGGAACTGGTGGATTATGTGTCTTCTGCTAATGCTAAATTCACAGAGAATCTAATGCAAGAAGTTGTGAAAATGGTGTCTGCAAATATATTCAGAACTCTTAGTCCTCAACCGCGTGAGAATAAACTTGTTGATGGCCTTGAAGTGGAAGAGGAGGAGCCTTCAATGGATCCTGCATGGCCTCATTTGCAACTTGTGTATGAGCTTTTCCTGAGATTTGTGGCATCACCTGAGCTGGATGCAAAGTTGGCTAAGAAATTCATTGATCAGTCCTTCATTTTGAGGCTGCTTGATTTGTTTGACTCTGAAGATCCAAGAGAAAGGGAATGCTTGAAAATGACTTTGCATCGCATCTATGGCAAATTTATGGCACATCGCCCTTTTATCAGGAAAGCAGTCAATAACATCTTTTTAAATTTTGTTTTTGAGACTGAGAAGCATAATGGGATTGCTGAATTCTTGGAAATTTTAGGGAGCATCATTAATGGTTTTGCACTACCATTGAAAGAAGAGCATAAACTGTTTCTTGTTAGAATACTGATTCCCCTGCATAAACCAAAGTGCTTAGCAATGTATCATCAGCAGCTATCTTATTGTATTAGCCAATTTGTGGAGAAAGACTGCAAGCTTGCTGATACAATTATTAGGGGGTTATTGAAGTACTGGCCAATAACAAATAGTTCAAAGGAAGTTATGTTCCTGAGTGAGTTGGAAGAAGTCTTAGAAGCAACTCAACCTCCAGAATTCCAGCGTTGTATGGTGCCATTATTTCACCGTGTTGCACGTTGTTTGAATAGCCCCCATTTTCAGGTGGCAGAAAGAGCTTTGTTCTTGTGGAACAATGATCACATTGTGAGCTTAATCAAGCAAAATCGCAAAGTGATACTGCCTATCATCTTTCCTGCTTTGGAGAAAAATGCTAGAAGTCATTGGAATCAGGCTGTCCACAGTTTGACTTTAAATGTGCGGAAGATTTTCCATGATCTTGACGCTGATCTATCTAGAGAATGCTTACAAAAGTTTGAGGAGAATGAATCAAAGGAAGCTGAAGTCACAGCATGGCGTGAAGCCACTTGGAAACGCTTGGAGGAGATTGCTGCAAAGAAAGCTGCAAGTAGTGAAGCAGTGCTTATTGGTAAAGCACCCACTCGCAGCTCCACAGGTTAG 1554 0.4125 MFRKVLNKLPRKSSKGSEHREQSGSGRSHGVSTSKSSVIVTPGSSKPGNSSPALNAGQNHGNRAPLPLSVNENPNGNFNSYEALPSIRDVPNSEKPSLFLKKLKMCSVVFDFTDPTKHLKEKEIKRQALVELVDYVSSANAKFTENLMQEVVKMVSANIFRTLSPQPRENKLVDGLEVEEEEPSMDPAWPHLQLVYELFLRFVASPELDAKLAKKFIDQSFILRLLDLFDSEDPRERECLKMTLHRIYGKFMAHRPFIRKAVNNIFLNFVFETEKHNGIAEFLEILGSIINGFALPLKEEHKLFLVRILIPLHKPKCLAMYHQQLSYCISQFVEKDCKLADTIIRGLLKYWPITNSSKEVMFLSELEEVLEATQPPEFQRCMVPLFHRVARCLNSPHFQVAERALFLWNNDHIVSLIKQNRKVILPIIFPALEKNARSHWNQAVHSLTLNVRKIFHDLDADLSRECLQKFEENESKEAEVTAWREATWKRLEEIAAKKAASSEAVLIGKAPTRSSTG. 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01754 517 FunFam Serine/threonine protein phosphatase 2A regulatory subunit 91 494 - -
Seca6g01754 517 MobiDBLite consensus disorder prediction 1 74 - -
Seca6g01754 517 MobiDBLite consensus disorder prediction 11 25 - -
Seca6g01754 517 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 501 IPR002554 GO:0000159|GO:0007165|GO:0019888
Seca6g01754 517 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 84 495 IPR002554 GO:0000159|GO:0007165|GO:0019888
Seca6g01754 517 Gene3D - 91 494 IPR011989 -
Seca6g01754 517 SUPERFAMILY ARM repeat 96 477 IPR016024 -
Seca6g01754 517 MobiDBLite consensus disorder prediction 26 74 - -
Seca6g01754 517 PIRSF PP2A_B56 4 516 IPR002554 GO:0000159|GO:0007165|GO:0019888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01754 Seca-Chr6 72523817 72528053 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01754 K11584 - gmx:100811438 886.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01754 6 72523817 72528053 Seca6g01754 6 72523817 72528053 ECH