Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01753 ATGACGGAAAGGGAAGGAAAGTGTGAGAAAATGAACAGACAGAAGAAAGGTGGGGGCCTGCTCGCCTTCACCGGAGCTGCTGCTGTGCTTGCAATTGCTGCGAACCTCGCTATCACCGCCATCAAGTACCATAAGGAAAAAAATGCAAAGAAGAAAGATCTTGCAGGTTCTAAAGTGCGTGTTAACCTATCTGCATCTGAGATTCTTAAGTTGGCAGACCAAATCATTGCCAAGTCAAACGAAGTCCATAATTCTGTTGCATCGGTGCCTCTCGATAAGGTTGCATATGCTAACGTTATATCACCTCTGGCGGAGCTGCAAGCGCAGCAATTCCCACTGATCCAATCTTGTGTGTTTCCGAAGCTGGTATCTCCTCAGGAGGATGTGCGCAAAGCGAGTGCAGAAGCAGAGCGAAGAATAGATGCTCATCTTGACATGTGCAGGTTTGCATTGCTGCCATTGATTCATAGTTTGTTGCACTATCTGTGGATCAGCAAACGTGAAGATGTTTATCTTGTCATTAAAGCATTTGCAGTAAGGGGGGACTGGATGAGTACTGAAGCTAAACAATTTGTTCAAATTCTGGTGAGAGACTTTGAGCGAAATGGATTGAACCTCACTGCAAGCAAAAGAGAAGAGTTGATGCGTCTAAGGGCTCAGATTGATGAATTAAGCTTTAGATATATCCAAAATCTTAATGATGATAGTACGTTTCTTCTCTTCAATGAGGCAGATTTAGCTGGATTACCTCCAGAGTTTCTCAAGGGTTTAGGTAAATCTGAAAATGGACAATTGAAGATCCCTCTGAGAAGTAATCATGTCACAGCTGTACTTGAATTTTGTAAGGTAGGAACTACAAGACGGATGGTATTGAGGGCATATGGAAATCAAAGTGGTGAAGTCAATCTTTCTATTTTAGAAAGTCTGGTGCAACAGCGCCATAAATATGCTCGTTTACTTGGCTATTCATGCTATGCAGAGTATGCTGTTGTTGTTAGAATGGCAAAGACACCTAAAATGGTATTTGATTTCCTGAAAGGCATATCGACATGTTTAACTGACTTGGCTATGAAAGAACTTGATATCTTGAAAGATTTGAAGAAAAAAGAGGAAGGAGAGTTTCCCTTTGGAATTGAAGATCTACTGTATTATATAAAACGATTTGAAAAGCAGAGTTGGGATTTGGACTTTGGCGAGATCGAGCAATACTTGCCAATTAATTTAGTTCTATCTGGAATCTTCAAAATTGTCCAAGACATTTTTGGTTTGAAGTTTGAGGAAATTGCGGGAGCTGATGTTTGGCATTGTGATGTTCGTGTTTTCTCAGTGTTTGACTTAAGTTCTAGTGAACTCTTAGGTTATTGCTACCTTGATTTGTTCTCAAGGGAGGGAAAGTATGGTCATAGTTGTATGATGGCTCTCCAGAACAGTGCATTAACAATCAGTGGAGCACGACAGATACCTGTCGCGTTACTAATATCTCAGTGTCAGAAGGATGCTGACAGTAGTCCTGGATTATTGCGGTTTTCCGAAGTGGTCAGTCTTTTCCACGAGTTTGGCCACGTGGTTCAACAAATTTGCAACCGTGCCTCATTTGCTAGAATTTCTGGAGTACTTGTTGATCCTGACTTTGTGGAAATACCTGCTCACCTGCTAGAGAACTGGTGTTACCAAAGCTCTTCTCTGAAGTTGATATCTGGATTTCATCAGGACATTACGAAGCCAATAAAGGATGACCTGTGCGAATCAATTAAAAAATGGAGGGCTTCCTTTTCTGCACTTAAATTGAAGCAAGAGATTCTATACTGTCTTTTTGATCAAATCATACATTCTGCGGATAACATAGACATTCAAGAGTTATTCAAGCATCTTCATCCCAAGGAGATGTTAGGGTTGCAGGTGTTAGAAGGAACCAATCCAGCTTCATGTTTTCCTTCTAGTGTTATTGGTTATGAGGCAGCTTGCTACAGTCGTATATGGAGTCAGGTTTTTGCTGCTGATATATTCGCCTCAAAGTTTTGCAATGATGTTTCAAACCAGCATGCCGGCATGCAATTTAGGAACAAGGTATTGGCCCCAGGCGGAGCGAAGGATTCTATTGAAGTTTTATCTGACTTTCTTGGAAGAGAACCATCAATTCAAGCTTACGTTGAGAACAAAACCAAGTATATTTTGTAA 2178 0.41 MTEREGKCEKMNRQKKGGGLLAFTGAAAVLAIAANLAITAIKYHKEKNAKKKDLAGSKVRVNLSASEILKLADQIIAKSNEVHNSVASVPLDKVAYANVISPLAELQAQQFPLIQSCVFPKLVSPQEDVRKASAEAERRIDAHLDMCRFALLPLIHSLLHYLWISKREDVYLVIKAFAVRGDWMSTEAKQFVQILVRDFERNGLNLTASKREELMRLRAQIDELSFRYIQNLNDDSTFLLFNEADLAGLPPEFLKGLGKSENGQLKIPLRSNHVTAVLEFCKVGTTRRMVLRAYGNQSGEVNLSILESLVQQRHKYARLLGYSCYAEYAVVVRMAKTPKMVFDFLKGISTCLTDLAMKELDILKDLKKKEEGEFPFGIEDLLYYIKRFEKQSWDLDFGEIEQYLPINLVLSGIFKIVQDIFGLKFEEIAGADVWHCDVRVFSVFDLSSSELLGYCYLDLFSREGKYGHSCMMALQNSALTISGARQIPVALLISQCQKDADSSPGLLRFSEVVSLFHEFGHVVQQICNRASFARISGVLVDPDFVEIPAHLLENWCYQSSSLKLISGFHQDITKPIKDDLCESIKKWRASFSALKLKQEILYCLFDQIIHSADNIDIQELFKHLHPKEMLGLQVLEGTNPASCFPSSVIGYEAACYSRIWSQVFAADIFASKFCNDVSNQHAGMQFRNKVLAPGGAKDSIEVLSDFLGREPSIQAYVENKTKYIL. 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01753 725 Gene3D Collagenase (Catalytic Domain) 405 555 IPR024079 GO:0008237
Seca6g01753 725 FunFam Thimet oligopeptidase 1 42 149 - -
Seca6g01753 725 Pfam Peptidase family M3 281 718 IPR001567 GO:0004222|GO:0006508
Seca6g01753 725 CDD M3A_TOP 69 718 - -
Seca6g01753 725 FunFam Probable thimet oligopeptidase 405 555 - -
Seca6g01753 725 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 62 718 - -
Seca6g01753 725 Gene3D Neurolysin, domain 3 211 717 IPR024077 -
Seca6g01753 725 Gene3D Endopeptidase. Chain P; domain 1 54 201 IPR024080 -
Seca6g01753 725 PANTHER PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED 35 721 IPR045090 GO:0004222|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01753 Seca-Chr6 72483179 72503843 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01753 K01392 - gmx:100793518 1164.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01753 6 72483179 72503843 Seca6g01753 6 72483179 72503843 ECH