Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01737 ATGTTGGCAGTTCTACGATCTCGAACGTGGGCCCGTTCTTCATCGATTCTTCAACCATGGAAGCTAGGGTTTTCCTCTTCGTCCGCTGTTGACGGCGGCAGTAGTAAATGCCTTCTGGATCTGCAGGAAATCGAGAAGGTTCTAACAGACGTTAAAGCTGATGACGTGAAGGTGATACCGGTTCCCAAGCACTGCGATTGGGCTGATTTCATGGTACTCGCCACTGGAAGGTCCACCTGGCACGTCAAGAACATCGCTCAAGCCCTAATTTACAAGGCAGGTTCGTTCGTTCTGTTATTTTTCTGTAACCAGGCTAAGCAGAAGCAGAGAGGAGTTGAACGAATGATGCTACCTAGTGTGGAAGGGCAAGCGGGAGGAAAGTGGATCGTCATTGACTCTGGCAAGGTGATAGTTCATGCACTTGATGAAAAAGCTAGGGCATACTACAATTTGGAGGGTCTTTGGACACCAGGGACATTACGAAATGAACCTATTGAGGTAAATATGAGGCTAACTTATATTGTTCCAAGAAAATTAGATTTTGTTCTTATTTATAGGCTTAATATTTTATTCAAGATATTTGAAATTTGCCGATTCATTTGGGTAGCAACTAATTTACGAACTAAGTGGGCTTTGTTCTATTGCTTTGTCCATGAGAAATTAGTAAAATCTTGA 675 0.4311 MLAVLRSRTWARSSSILQPWKLGFSSSSAVDGGSSKCLLDLQEIEKVLTDVKADDVKVIPVPKHCDWADFMVLATGRSTWHVKNIAQALIYKAGSFVLLFFCNQAKQKQRGVERMMLPSVEGQAGGKWIVIDSGKVIVHALDEKARAYYNLEGLWTPGTLRNEPIEVNMRLTYIVPRKLDFVLIYRLNILFKIFEICRFIWVATNLRTKWALFYCFVHEKLVKS. 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01737 224 Hamap Ribosomal silencing factor RsfS [rsfS]. 34 156 IPR004394 -
Seca6g01737 224 Gene3D Beta Polymerase, domain 2 39 157 IPR043519 -
Seca6g01737 224 SUPERFAMILY Nucleotidyltransferase 42 162 IPR043519 -
Seca6g01737 224 Pfam Ribosomal silencing factor during starvation 43 155 - -
Seca6g01737 224 NCBIfam ribosome silencing factor 42 155 IPR004394 -
Seca6g01737 224 FunFam Mitochondrial assembly of ribosomal large subunit 1 39 168 - -
Seca6g01737 224 PANTHER IOJAP SUPERFAMILY ORTHOLOG 25 168 IPR004394 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01737 Seca-Chr6 72143937 72145445 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01737 - - gmx:100500386 251.906
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01737 6 72143937 72145445 Seca6g01737 6 72143937 72145445 ECH