Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01649 ATGAAGAACCGCTATCCTCTACCAGAGAGACGGTGGTTCCTTGGGTTGGCCATAGTGGGGTTGATAGGAGCGGTGCTGTTCATAGCCACCGCGATCACAACCTCCGACCGGCGATTCCTATGCCCGCTTGCAGCTGGGATCCGAGCCCGAGCCCGAGGCAATGAGGATTACAACCCGTCACCGATCCAATTAAGGGCGATACTCCACTACGCAACATCGCGCGTGGTCCCTCAACAATCGGTTTCGGAGATCAAGATCAGCTTCGATGTGCTGAAATCATTTGGTCGCCCTTGCAACTTTCTCGTCTTTGGACTCGGCCATGATTCACTCATGTGGGCCTCATTAAACCCAGGTGGCAACACGATGTTCCTCGAGGAGGACCCGAAGTGGGTCCAAGCGGTACTCAAGGACGCCCCGGGCCTGAGAGCCCACACCGTCCGCTACCGCACTCAGCTCCGCGAAGCCCATAAGCTTCTCTCATCGTATCGCTCTGAGCCCATGTGTTTCCCGACCAAGGCCTTCCTACGTGGCAACCAGGCCTGCAGGCTCGCACTGGAGAATCTACCCGATGAGATTTACGAGACGGAGTGGGACCTCATCATGATCGACGCGCCCAAAGGGTATTACGCCGAGGCACCGGGCCGCATGGCGGCGGTGTTCTCAGCCGCCGTCATGGCGAGGAACAGGAAAGGATCCGGTGTGACGCACGTGTTCCTGCACGATGTGGATCGGAAGGTGGAGAAAGTTTACGCAGAGGAGTTTCTTTGTAAGAAAAACTTGGTGAAGGGTGTTGGAAGACTCTGGCATTTTCAAATACCTCCGTCGTTTAACGACACCAATGCTGTGCGTTTCTGCTAG 858 0.5606 MKNRYPLPERRWFLGLAIVGLIGAVLFIATAITTSDRRFLCPLAAGIRARARGNEDYNPSPIQLRAILHYATSRVVPQQSVSEIKISFDVLKSFGRPCNFLVFGLGHDSLMWASLNPGGNTMFLEEDPKWVQAVLKDAPGLRAHTVRYRTQLREAHKLLSSYRSEPMCFPTKAFLRGNQACRLALENLPDEIYETEWDLIMIDAPKGYYAEAPGRMAAVFSAAVMARNRKGSGVTHVFLHDVDRKVEKVYAEEFLCKKNLVKGVGRLWHFQIPPSFNDTNAVRFC. 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01649 285 Gene3D Vaccinia Virus protein VP39 73 283 IPR029063 -
Seca6g01649 285 Pfam Polysaccharide biosynthesis 83 270 - -
Seca6g01649 285 NCBIfam TIGR01627 domain 65 285 IPR006514 GO:0045492
Seca6g01649 285 PANTHER OS11G0490100 PROTEIN 22 285 IPR006514 GO:0045492
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01649 Seca-Chr6 70152213 70153070 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01649 - - gmx:100791951 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01649 6 70152213 70153070 Seca6g01649 6 70152213 70153070 ECH
Seca6g01649 6 70152213 70153070 Seca6g01649 6 70152213 70153070 PCT