Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01639 ATGGGGAAGCATATGAAAATCTTTGTTTATCCGTTTCACAGATGGACCTCCCTTGACATTGAAGATAGCTCTGTAGATGACTGTTGTGGCCTTGTAATGGCAGCTGGAAAGTCTGGTAGTTTCAGGATGTCGGAGCCTCTAAAGCCTCCACCTGCTAAGAAGCCTCGAAGAGATAGAAGCAGGGGCAAAACATCTGGAAGATCCTGTACAAGTGAAGTTATGGAACAAGAAATTTGGAAAGATTTTCCTGAAGATTTATTTGAGGCTGTGATTGCACGACTTCCCATTGCCACATTTTTCCGCTTCCGTTCTGTATGCCGGCAATGGAACTCTTTGCTGACATCTCAAAGTTTTTCTCAGCATTGTGCTGAAGTCCGACAAGAAAATCCATGGTTTTACACCATAACGCATGAAAATGTAAATTCAGGAGCCATGTATGATCCTTCTTTGAAAAAATGGCATCATCCCTCTATATCAACACTGCCCACAAAGGTGATTGTTTTACCAGTAGCTTCTGCAGGGGGTTTGGTTTGCTTTCTTGACATTGGTCACCGAAACTTCTATGTATGTAACCCCCTGACTCAATCCTTCAAGGAGTTGCCAGCTCGGTCAGTTAGGGTCTGGTCTCGTGTTGCTGTAGGGATGACAATAAATGGAAATTCAACCGGTTCAGGCTACAAGATCCTATGGGTGGGCTGTGATGGAGAATATGAAGTTTATGACTCACTGACAAACTCTTGGAGTCGTCCAGGAAATATGCCTGGAGGCATGAAGCTGCCATTATCGCTCAACTTTAGGTCTCAAGCTGTCTCTGTTGGCAGCACACTTTACTTCATGCGATCAGATCCAGAAGGGATTATTTCCTATGATATGGAAACCGGGGTTTGGAAACAGTACATAATCCCAGCGCCACTGCATCTGACTGACCACACTCTGGCTGAGTGTGATGGGCAGATCATGCTTGTGGGTTTGCTCACAAAGAATGCAGCCACATGTGTATGCATATGGGAGCTGCAGAAAATGACACTATTGTGGAAGGAGGTTGACAGAATGCCAAACATATGGTGCTTGGACTTTTATGGGAAGCACGTTAGAATGACTTGCCTGGGGAACAAAGGCTTGCTCATGTTGTCCTTGAGATCAAAACAAATGAATCGGTTGGTTACTTACAACATAGCAAAGAAGGAATGGCTGAAGGTTCCCGGGTGTGTGGTGCCACATGGGAGAAAACGGCAGTGGATAGCATGTGGTACTGCATTTCATCCATGCCTGACTGCGGTGGCTTGA 1287 0.453 MGKHMKIFVYPFHRWTSLDIEDSSVDDCCGLVMAAGKSGSFRMSEPLKPPPAKKPRRDRSRGKTSGRSCTSEVMEQEIWKDFPEDLFEAVIARLPIATFFRFRSVCRQWNSLLTSQSFSQHCAEVRQENPWFYTITHENVNSGAMYDPSLKKWHHPSISTLPTKVIVLPVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVRVWSRVAVGMTINGNSTGSGYKILWVGCDGEYEVYDSLTNSWSRPGNMPGGMKLPLSLNFRSQAVSVGSTLYFMRSDPEGIISYDMETGVWKQYIIPAPLHLTDHTLAECDGQIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSKQMNRLVTYNIAKKEWLKVPGCVVPHGRKRQWIACGTAFHPCLTAVA. 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01639 428 PANTHER BNACNNG10540D PROTEIN 56 421 - -
Seca6g01639 428 FunFam F-box only protein 6 129 415 - -
Seca6g01639 428 SMART fbox_2 82 122 IPR001810 GO:0005515
Seca6g01639 428 SUPERFAMILY Galactose oxidase, central domain 143 408 IPR011043 -
Seca6g01639 428 ProSiteProfiles F-box domain profile. 76 121 IPR001810 GO:0005515
Seca6g01639 428 Pfam F-box domain 79 118 IPR001810 GO:0005515
Seca6g01639 428 FunFam F-box only protein 6 79 118 - -
Seca6g01639 428 SUPERFAMILY F-box domain 74 158 IPR036047 GO:0005515
Seca6g01639 428 CDD F-box_AtFBW1-like 81 118 - -
Seca6g01639 428 Gene3D - 79 118 - -
Seca6g01639 428 Gene3D - 133 414 IPR015915 GO:0005515
Seca6g01639 428 MobiDBLite consensus disorder prediction 41 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01639 Seca-Chr6 69744329 69745615 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01639 - - gmx:100810179 797.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01639 6 69744329 69745615 Seca6g01639 6 69744329 69745615 ECH
Seca6g01639 6 69744329 69745615 Seca6g01639 6 69744329 69745615 PCT