Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01616 ATGGCTGCCTCTCTCGTGCTCTCTACCTCTTTCTCTTCCACCCATCCATTCCTTTCTGCCTCTTCTTATTCCAATTTAATCTCCAAACGAAAACAGAGTTGGCAATGCTTCTCCTTCTCCAACTCCAACTTGCCTTGTTCAAATTCAAGCTCAAAATCACTTTTGTTTTCTTCTCGCAACAAGTTGGTTGCCCATTGTTCAATGAGGGACAAAGATTCGAGCTTTATAGGGGATGACTCCGCGGCGTTTGAATTGGGGGAACAGAAAATATCTTCGTGGATTTATTTCACCGTTATTTTGGGAGTGGTGCTCTTTGTTCTGAACGTCGCATGGATTGATAATTCAACTGGCTTCGGCAAATCATTCATTGATGCCATTTCAGGGATTTCTGATTCTCACGAGGTGGTAATGTTGATCCTAATTCTCATTTTTGCCATTGTCCACAGTGGCTTGGCTAGCCTCCGGGAGACTGGTGAGAAACTCATTGGGGCAAGAGCTTACCGTGTTCTTTTTGCAGGGATATCACTACCTTTGGCTGTCAGTACCATTGTGTATTTTATTAACCATAGATATGATGGACTTCAACTCTGGCAGCTCCAGAATGTTCCTGGGATTCATCAGCTTCTGTGGCTTTCTAATTTCATCTCTTTCTTTTTCCTATATCCTTCAACCTTTAATCTTTTAGAGGTTGCAGCAGTTGACAAGCCTAAATTACATCTATGGGAAACTGGGATCATAAGAATAACCAGGCATCCACAGATGGTTGGGCAGGTTATGTGGTGTCTTGCTCATACAATTTGGATTGGAAATTCTGTGGCTGTTGCTGCTTCATTTGGCTTAATTGCACATCATCTATTTGGTGTCTGGAATGGAGACAGGAGATTGGCTTCAAGGTATGGGAAAGATTTTGAGAGGGTTAAGGGTCGAACAAGTGTTGTCCCTTTTGCAGCAATCCTTGAAGGTCGACAAAGATTACCTAAAGATTTCTACAAGGAGTTTATTCGAGTGCCATACCTTACAATTACTGCATTAACATTAGGAGCTTATTTTGCACACCCCCTTATGCAGGCTGCTAGTTTCAACCTTCATTGGTAA 1095 0.4228 MAASLVLSTSFSSTHPFLSASSYSNLISKRKQSWQCFSFSNSNLPCSNSSSKSLLFSSRNKLVAHCSMRDKDSSFIGDDSAAFELGEQKISSWIYFTVILGVVLFVLNVAWIDNSTGFGKSFIDAISGISDSHEVVMLILILIFAIVHSGLASLRETGEKLIGARAYRVLFAGISLPLAVSTIVYFINHRYDGLQLWQLQNVPGIHQLLWLSNFISFFFLYPSTFNLLEVAAVDKPKLHLWETGIIRITRHPQMVGQVMWCLAHTIWIGNSVAVAASFGLIAHHLFGVWNGDRRLASRYGKDFERVKGRTSVVPFAAILEGRQRLPKDFYKEFIRVPYLTITALTLGAYFAHPLMQAASFNLHW. 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01616 364 Pfam NnrU protein 136 355 IPR009915 -
Seca6g01616 364 Gene3D - 128 315 - -
Seca6g01616 364 PANTHER 15-CIS-ZETA-CAROTENE ISOMERASE, CHLOROPLASTIC 1 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01616 Seca-Chr6 69047584 69052751 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01616 K15744 - gmx:100793910 545.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01616 6 69047584 69052751 Seca6g01616 6 69047584 69052751 ECH