Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01607 ATGCCCATCTTCTCTGCAACGCTAGGCTCCTTCACTTCTTCCATCTCCTTCCTCTCACCTTCACAATCACAACCCGACCCTTCTTCTTCTCCTTTCACTTTTCCAAAATTCCCTCACAAGTTAACCGTCAAGCCACCATTACAATGGCATCATCATCATCATCACAGCACTAAAATCTTCGTCTCTGGCGAGACTCAGATTGACCGAAATCCCGACACTGGACTTCTTCAACGCCCTTCTCCTCCTCCAGACCCAGAGGATGCTGCTCGTCAGGCTCGGAGATCGTCAGATTGGAAGGCTGCAAACACTTATAAAGAAAGTGGACTGATTTACAATAGTAGGGTTGAAGGTTTTAATAGTGGAGGACTGCTGCTTAGGTTTTATTCTATTTTGGGGTTTCTCCCATACCCAGAGTTGAGCCCTATGCATGCTTCTAAAGAACCAGAGAAAACTATCCAAGAAATTGCACAAGGCTTAGTTGGTTCAATCATATCGGTGAAGGTACTGCTCGCGGATGAGGATAAAAGGAAATTGATCTTCTCTGAAAAGAAAGCTGCCTGGTCTAAATTTTCAAAACAGGTCAAGATTGGGGATATTTTTGAAGCAAGAGTTGGTTCTGTTGAGGACTATGGCGCTTTTGTTCATTTGCGCTTCCCTGACGGTCTTTATCACCTTACCGGACTTATACACGTCTCTGAAGTGTCATGGGATATAGTCCGTGATGTAAGAGACTTCTTAACAGAAGGTGATGAAGTGAGGGTCAAAGTTATCGGTGTTGATAGTGAAAAGTCAAGAATTACACTATCAATTAAACAGCTAGAAGAAGATCCACTTCTAGAAACTCTGGACAAAGTAATACCTCAGGATGGTTTAGATGATGTTGATTCTTTGAGCGGTAGCAATAGCAGTGGCATTGAGCCCCTTCCAGGTCTTGAAATAATCCTTGAAGAGCTACTACAGGAAGAAGGTATATTTGATGCAAGAATCAGTCGTCAAGGGTTTGAAAAACGAGTGGTCTCACAAGATTTGCAGCTTTGGCTTTCTAATGCACCCCCAACGAACCAAAGGTTTACTCTCCTTGCTCGGGCTGGAAGACAGGTAAATTTCTTTGAATAA 1116 0.4328 MPIFSATLGSFTSSISFLSPSQSQPDPSSSPFTFPKFPHKLTVKPPLQWHHHHHHSTKIFVSGETQIDRNPDTGLLQRPSPPPDPEDAARQARRSSDWKAANTYKESGLIYNSRVEGFNSGGLLLRFYSILGFLPYPELSPMHASKEPEKTIQEIAQGLVGSIISVKVLLADEDKRKLIFSEKKAAWSKFSKQVKIGDIFEARVGSVEDYGAFVHLRFPDGLYHLTGLIHVSEVSWDIVRDVRDFLTEGDEVRVKVIGVDSEKSRITLSIKQLEEDPLLETLDKVIPQDGLDDVDSLSGSNSSGIEPLPGLEIILEELLQEEGIFDARISRQGFEKRVVSQDLQLWLSNAPPTNQRFTLLARAGRQVNFFE. 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01607 371 ProSiteProfiles S1 domain profile. 197 271 IPR003029 GO:0003676
Seca6g01607 371 MobiDBLite consensus disorder prediction 60 99 - -
Seca6g01607 371 Gene3D - 189 276 IPR012340 -
Seca6g01607 371 Gene3D - 98 188 IPR012340 -
Seca6g01607 371 Pfam S1 RNA binding domain 194 271 IPR003029 GO:0003676
Seca6g01607 371 ProSiteProfiles S1 domain profile. 108 183 IPR003029 GO:0003676
Seca6g01607 371 SUPERFAMILY Nucleic acid-binding proteins 108 183 IPR012340 -
Seca6g01607 371 SMART S1_6 195 271 IPR022967 -
Seca6g01607 371 SMART S1_6 106 183 IPR022967 -
Seca6g01607 371 SUPERFAMILY Nucleic acid-binding proteins 195 284 IPR012340 -
Seca6g01607 371 PANTHER OS03G0844900 PROTEIN 17 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01607 Seca-Chr6 68816885 68831784 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01607 - - gmx:100786308 500.36