Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01605 ATGGCTGTGTGTGGGTGTATATCTGCTGCGAACTTGAATTGGCAGGTTGGTACGAGAAACTTGTCCAAATTGGGTTCTCCTATGAACTCAGATAACACAATTTCGCTATCATTTGGTGGAAGTGAGTTTATGGGTAGTCTTAGCTTGAGACTTGCTTCAACTCATGCTGCTAAGAGCACAAGGTTGAGGAACCATGGCTCTCCCTTGCGGGTAGTTTGCATCGATTATCCACGCCCGGAGCTTGAAAATACTGTTAATTTCATTGAAGCTGCTTACTTGTCTTCCACCTTTCGTGCTTCTCCACGTCCAACCAAACCCTTGAAGGTCGTTATTGCTGGTGCAGGATTGGCTGGTTTATCAACTGCAAAATATTTGGCAGATGCTGGTCATAAGCCTGTATTGCTGGAAGCAAGAGATGTTCTAGGTGGAAAGGTTGCTGCATGGAAAGATGAAGATGGAGACTGGTATGAGACAGGCCTACACATATTCTTTGGGGCTTACCCTAATGTGCAAAACCTATTTGGAGAACTTGGTATTAATGATCGGTTACAATGGAAGGAGCATTCTATGATTTTTGCTATGCCAAGTAAGCCTGGAGAGTTCAGTCGATTTGATTTTCCTGATGTCCTCCCTGCTCCATTAAATGGGATATGGGCAATATTGAGGAACAATGAGATGCTGACCTGGCCAGAGAAAGTCAAATTTGCAATTGGACTTCTGCCAGCTATGCTTGGTGGACAGTCATATGTTGAGGCTCAAGATGGTGTTTCTGTTAAAGAATGGATGAAAAAGCAGGGCGTACCTGAACGAGTAACTGACGAGGTGTTCATAGCAATGTCAAAGGCACTAAACTTCATCAACCCTGATGAACTTTCAATGCAATGTATATTGATTGCTTTAAACCGCTTTCTTCAGGAGAAGCATGGGTCTAAGATGGCCTTTTTGGATGGCAATCCCCCTGAAAGACTTTGTATGCCGATTGTTGATCATATTCAGTCCTTGGGTGGTGAAGTTCATCTCAATTCACGCATTCAAAAAATTGAGCTAAATGATGATGGCACAGTGAAGAGCTTCCTACTAAACAATAGGAAGGTGATTGAAGGGGATGCTTACGTGTTTGCAACTCCAGTGGATATTTTGAAGCTGCTTCTGCCTGATAACTGGAAAGGGATTCCATATTTCCAGAGATTGGAGAAATTAGTTGGAGTTCCAGTCATAAATGTTCATATATGGTTTGACAGAAAACTGAAGAACACATATGATCACCTTCTCTTTAGCAGAAGTCCCCTTCTGAGTGTATATGCTGACATGTCCGTAACTTGTAAGGAATATTATAACCCAAACCAGTCTATGTTGGAGTTGGTTTTCGCTCCAGCCGAAGAATGGATTTCACGTAGTGATGAAGATATTATTGGTGCCACAATGGCTGAACTGGCCAAACTCTTTCCGGATGAAATATCTGCAGACCAAAGCAAAGCAAAGATTGTCAAGTACCATGTTGTCAAAACACCAAGGTCGGTTTACAAAACTGTTCCTAATTGTGAACCTTGTCGTCCTATACAAAGATCTCCTATAGAAGGTTTCTATTTAGCTGGAGATTACACAAAACAAAAATATTTAGCCTCAATGGAAGGCGCTGTTCTTTCTGGGAAGTTTTGTGCGCAGGCTATTGTACAGGTAAATATGTCACAAAAATATCTATAG 1704 0.419 MAVCGCISAANLNWQVGTRNLSKLGSPMNSDNTISLSFGGSEFMGSLSLRLASTHAAKSTRLRNHGSPLRVVCIDYPRPELENTVNFIEAAYLSSTFRASPRPTKPLKVVIAGAGLAGLSTAKYLADAGHKPVLLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPSKPGEFSRFDFPDVLPAPLNGIWAILRNNEMLTWPEKVKFAIGLLPAMLGGQSYVEAQDGVSVKEWMKKQGVPERVTDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHIQSLGGEVHLNSRIQKIELNDDGTVKSFLLNNRKVIEGDAYVFATPVDILKLLLPDNWKGIPYFQRLEKLVGVPVINVHIWFDRKLKNTYDHLLFSRSPLLSVYADMSVTCKEYYNPNQSMLELVFAPAEEWISRSDEDIIGATMAELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTVPNCEPCRPIQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKFCAQAIVQVNMSQKYL. 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01605 567 SUPERFAMILY FAD/NAD(P)-binding domain 104 559 IPR036188 -
Seca6g01605 567 FunFam 15-cis-phytoene desaturase, chloroplastic/chromoplastic 104 566 - -
Seca6g01605 567 Gene3D - 104 565 IPR036188 -
Seca6g01605 567 Pfam Flavin containing amine oxidoreductase 116 557 IPR002937 GO:0016491
Seca6g01605 567 NCBIfam 15-cis-phytoene desaturase 108 558 IPR014102 GO:0016117|GO:0016166
Seca6g01605 567 PANTHER PROTOPORPHYRINOGEN OXIDASE 97 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01605 Seca-Chr6 68719205 68728754 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01605 K02293 - gmx:100127420 1028.85