Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01604 ATGACATTATTGATTGTGTTAATTGCTTCATATTTCAGCTATGGACCATGTCAAACTCCTACTTTAGGATTTTGTGTGCAGCGGTATTTACAAATAAATACTTTCAAGCCAGAAAAGTTTTGGAGTTTGCACCCTTACATAATTCAAAATGGCTATGAACTTCAGCTAGAATGGCATCGTAGCAAATTGTTTGACATAAATGTTGCTATGATGTTTCAAAAGCTGGTTGCCGAAGATGGACTTTTGGAAGTGACTGACATATCAGAAAAACAGGAAACCAAAGGTCGACCTGTTGGTCTAAACACAGTGAATCTTCTGAAGGTTGCTTCAAGTGCTTTAGGATTTGGTCCTCAGGTGGCTATGCAACTAGCTGAACGGTTGTATACTCAAGGCTTCATCAGCTATCCACGCACAGAAAGCACGGCATACCCTCCTTCATTTGACTTTCGTGGTGCACTCTCTGCACTAAAAAATAATCCAACTTGGGGTAATTATGTAGAAGGGTTACTTACCAATGGTTATCAGAAACCTCGATTGGGAACAGATGCAGGGGACCATCCTCCCATTACTCCAATGAGATCTGCAGCAGAGGATATGCTAGGCAATGATGCTTGGAAGCTGTACCAATATATTTGTCAACACTTCATTGGGACAGTGTCTCCAGACTGCAAGTATATAAGGAGAAAGGTTGAGTTTTCAATTGGTGGAGAGTCCTTCCATTGTACAGGGCAGCATGTTATCACTAAGGGATTTACGGCTATTATGCCTTGGTTGGCCATAAATGATAAAAATATTCCATCATTTATAAAAGGGCAGAAAATAGAAGTATCACAAGTGGAGCTCTATGAGGGGAGTACCACACCTCCAGATTATCTTACTGAAAGTGAGCTGATCTCCCTGATGGAGAAGAATGGAATAGGAACAGATGCATCAATTCCTGTACATATTAACAACATATGTGAGCGGAATTATGTTCAGGTACAAGCAGGCAGGAAGCTTGTCCCAACTGCATTAGGTATCACTTTAGTAAGAGGTTATCAATCAATTGATCCAGACCTCTGCCTGCCTGATATCCGTAGCTTCATTGAGCAACAAATTACTCTTATTGCTAGGGGTCAGGTAGATCATCATCATGTAGTGCAGCATGTAATCCAACAGTTCAAGCAGAAGTTTTGTTACTTTGTCAAGAAGCATGACAGGATTTTCCGAGGCACAGGGGATAGTGTGGATGCACTTTTTATATCTATTGAAGCCATGGATGCATTATTTGAAGCACAATTTTCTACACTTACTGATTCAGGGCGTATTCTGAGTAAATGTGGTAAATGCTTGCGGTATATGAAGTACATTTCTGCTCAGCCATCACGTTTGTATTGTGGTACATGTGAGGAGGTTTATTATCTTCCACAAAAGGGCACAATCAAGGTAGAATCATATAACCTGTCTAATAGTATCAAAATCTAA 1464 0.4023 MTLLIVLIASYFSYGPCQTPTLGFCVQRYLQINTFKPEKFWSLHPYIIQNGYELQLEWHRSKLFDINVAMMFQKLVAEDGLLEVTDISEKQETKGRPVGLNTVNLLKVASSALGFGPQVAMQLAERLYTQGFISYPRTESTAYPPSFDFRGALSALKNNPTWGNYVEGLLTNGYQKPRLGTDAGDHPPITPMRSAAEDMLGNDAWKLYQYICQHFIGTVSPDCKYIRRKVEFSIGGESFHCTGQHVITKGFTAIMPWLAINDKNIPSFIKGQKIEVSQVELYEGSTTPPDYLTESELISLMEKNGIGTDASIPVHINNICERNYVQVQAGRKLVPTALGITLVRGYQSIDPDLCLPDIRSFIEQQITLIARGQVDHHHVVQHVIQQFKQKFCYFVKKHDRIFRGTGDSVDALFISIEAMDALFEAQFSTLTDSGRILSKCGKCLRYMKYISAQPSRLYCGTCEEVYYLPQKGTIKVESYNLSNSIKI. 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01604 487 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 125 139 IPR023406 GO:0003917
Seca6g01604 487 FunFam DNA topoisomerase 96 221 - -
Seca6g01604 487 Gene3D Topoisomerase I, domain 3 36 289 IPR013825 -
Seca6g01604 487 SMART topIaneu2 88 343 IPR003602 GO:0003677|GO:0003916|GO:0006265
Seca6g01604 487 Gene3D Topoisomerase I, domain 2 10 391 IPR013824 -
Seca6g01604 487 PRINTS Prokaryotic DNA topoisomerase I signature 207 223 IPR013497 GO:0003677|GO:0003916|GO:0006265
Seca6g01604 487 PRINTS Prokaryotic DNA topoisomerase I signature 12 30 IPR013497 GO:0003677|GO:0003916|GO:0006265
Seca6g01604 487 PRINTS Prokaryotic DNA topoisomerase I signature 130 139 IPR013497 GO:0003677|GO:0003916|GO:0006265
Seca6g01604 487 PRINTS Prokaryotic DNA topoisomerase I signature 305 319 IPR013497 GO:0003677|GO:0003916|GO:0006265
Seca6g01604 487 SUPERFAMILY Prokaryotic type I DNA topoisomerase 4 449 IPR023405 -
Seca6g01604 487 Pfam DNA topoisomerase 10 381 IPR013497 GO:0003677|GO:0003916|GO:0006265
Seca6g01604 487 Gene3D Topoisomerase I, domain 4 96 221 IPR013826 -
Seca6g01604 487 PANTHER PROKARYOTIC DNA TOPOISOMERASE 10 475 IPR000380 GO:0003677|GO:0003917|GO:0006265
Seca6g01604 487 CDD TOP1Ac 13 372 IPR013497 GO:0003677|GO:0003916|GO:0006265
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01604 Seca-Chr6 68665157 68676519 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01604 K03165 - gmx:100791807 845.884