Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01595 ATGTCGGAGATGGCGAACACAGATCCCGAGGGTGTAGACGGAGTTCGCATGACGTGGAACGTGTGGCCACGCACCAAGGTGGAAGCCAGCAAGTGCGTGATCCCTCTTGCGGCCACCATCGCCGTGATCCGCCCTCACCCCGACATACCTCGTCTCCCTTACGCCCCTCTCCGCTGCAAGACATGCACCTCCGCTCTCAACCCTTTCGCGCGCGTCGACTTCACCGCCAAGATCTGGATCTGTCCCTTCTGCTACCAACGCAACCACTTCCCCCCTCACTACGCTGCAATCTCCGAAACCAACCTTCCCGGCGAACTCTACCCTCAATACAGCACCGTTGAATACGCTCTCCCTCACAATCCCGATCCCTCGGCTTCCCCTTCCCCTGTTTTCCTCTTCCTCCTTGATACTTGCCTCATCGAAGAAGAGATCCAGTATCTCAAATCGGCTTTTCGTCAAGCCATTGGTCTCTTGCCTGACAATGCCCTTGTTGGTTTCGTTTCGTTTGGTACTCAGGTTCAGGTTCATGAATTGGGGTTCTCTGATATGTCCAAGGTTTATGTCTTCCGAGGTTCTAAGGAGATTTCTAAAGATCAGATTTTGGAGCAGCTGGGTCTTGTTGCTGCTGCTTCTGGGAGGAGACCTCACAAGGGACCTACTGGTTTCCCAAATTCTGGCGTCACGCGGTTCTTGTTGCCTGCATCTGATTGTGAATACACTCTCAATGCGCTGCTTGATGAATTGCAAACCGATCAGTGGCCTGTTCCGCCTGGTCGTCGTCCTGCTCGCTGTACTGGAGTTGCATTGAGTGTTGCTTCCGGATTGCTTAGTGCTTGTAATCCTGGAACTGGGGCTAGGATCATAGCTTTGGTTGGGGGGCCATGCACAGAAGGACCTGGCACGATTGTGTCAAAAGATCTATCAGACCCAGTGCGTTCTCATAAAGATCTTGATAAAGATGCAGCACCGTACTTCAAGAAAGCAGTCAAATTTTATGAGGGTCTTGCAAAACAGCTGGTTAGCCAGGGCCACGTTTTAGATCTTTTTGCATCAGCACTTGATCAGGTTGGAGTTGCAGAAATGAAAGTTGCGGTGGAAAGAACAGGTGGACTTGTTGTCCTGGCTGAAAGTTTTGGTCATTCAGTCTTCAAGGACTCTTTTAAACGTGTTTTTGAGGATGGGGAGCAATCTCTTGGTCTTTGTTTCAATGGAACCCTTGAGATAAATTGCTCGAAGGAAATCAAAATTCAAGGAATAATTGGACCTTGCACATCGATGGAAAAGAAAGGGCCTTCTGTTGCTGATACCGTTATAGGAGAGGGGAACACAACAGCATGGAAGATGTGTGGCCTTGACAAGAGTACATGCTTGACTGTGATGTTTGATCTTACATCAAGTGATCGTTCAAACACTCCCGGTGCTGTCAACCCACAACTGTACCTGCAGTTCCTTACAAGTTACCAGAGCCCAGATGGTCAATTAGTGCTTCGTGTCACAACAGTAACTAGAAGATGGGTAGACAGTTCTGTTAGCTCTGAGGAATTGGTTCAAGGATTTGACCAAGAAACTGCTGCCGTGGTAATGGCTAGATATGCTTCTCTGAAAATGGAGACTGAGGTATGTCACAAGTTGTGTTACTATCTGTTGTTTTCTTTTGAAACATTTGACGCCACACGGTGGTTGGATCGGTTCCTCATTCGCCTCTGCTCTAAGTTTGGTGACTACCGCAAGGATGATCCATCATCTTTTACATTAAACCCATCATTTTCACTGTTCCCTCAGTTTATGTTCAATCTGCGACGCTCACAGTTTGTACAGGTTTTTAACAACAGTCCAGATGAGACTGCATACTTCCGCATGTTGTTAAACAGGGAAAACATTAGCAATGCGGCTGTCATGATTCAGCCATCTCTAATATCATATTCATTTAATTCACTGCCTGCCCCAGCATTGTTAGATGTGGCTTCCATTGCTGCAGACCGGATTCTTTTGCTAGATTCATATTTTAGTGTGGTTATTTTTCATGGGATGACAATAGCTCAATGGCGCAACTTGGGATACCAGAACCAACCAGAACACCAGGCATTTGCACAACTATTACAAGCTCCACATGATGATGCCCAAATGATAATAAGAGATCGGTTTCCTGTTCCTAGATTGGTAGTGTGTGATCAACATGGTTCTCAGGCTAGATTTTTATTAGCAAAGCTGAATCCATCAGCAACATATAATAATGCACATGAGATGGCTGCTGGTTCAGATGTAATCTTCACTGATGATGTGAGCCTCCAAGTTTTCTTTGAGCATCTGCAAAGGCTGGCTGTCCAATCTTGA 2334 0.4687 MSEMANTDPEGVDGVRMTWNVWPRTKVEASKCVIPLAATIAVIRPHPDIPRLPYAPLRCKTCTSALNPFARVDFTAKIWICPFCYQRNHFPPHYAAISETNLPGELYPQYSTVEYALPHNPDPSASPSPVFLFLLDTCLIEEEIQYLKSAFRQAIGLLPDNALVGFVSFGTQVQVHELGFSDMSKVYVFRGSKEISKDQILEQLGLVAAASGRRPHKGPTGFPNSGVTRFLLPASDCEYTLNALLDELQTDQWPVPPGRRPARCTGVALSVASGLLSACNPGTGARIIALVGGPCTEGPGTIVSKDLSDPVRSHKDLDKDAAPYFKKAVKFYEGLAKQLVSQGHVLDLFASALDQVGVAEMKVAVERTGGLVVLAESFGHSVFKDSFKRVFEDGEQSLGLCFNGTLEINCSKEIKIQGIIGPCTSMEKKGPSVADTVIGEGNTTAWKMCGLDKSTCLTVMFDLTSSDRSNTPGAVNPQLYLQFLTSYQSPDGQLVLRVTTVTRRWVDSSVSSEELVQGFDQETAAVVMARYASLKMETEVCHKLCYYLLFSFETFDATRWLDRFLIRLCSKFGDYRKDDPSSFTLNPSFSLFPQFMFNLRRSQFVQVFNNSPDETAYFRMLLNRENISNAAVMIQPSLISYSFNSLPAPALLDVASIAADRILLLDSYFSVVIFHGMTIAQWRNLGYQNQPEHQAFAQLLQAPHDDAQMIIRDRFPVPRLVVCDQHGSQARFLLAKLNPSATYNNAHEMAAGSDVIFTDDVSLQVFFEHLQRLAVQS. 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01595 777 Pfam Sec23/Sec24 helical domain 520 629 IPR006900 GO:0006886|GO:0006888|GO:0030127
Seca6g01595 777 Gene3D - 10 503 - -
Seca6g01595 777 Pfam Sec23/Sec24 zinc finger 56 94 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Seca6g01595 777 Gene3D - 53 112 - -
Seca6g01595 777 FunFam Protein transport protein SEC23 53 112 - -
Seca6g01595 777 Pfam Sec23/Sec24 trunk domain 128 391 IPR006896 GO:0006886|GO:0006888|GO:0030127
Seca6g01595 777 SUPERFAMILY vWA-like 129 392 IPR036465 -
Seca6g01595 777 FunFam Protein transport protein SEC23 517 651 - -
Seca6g01595 777 SUPERFAMILY Zn-finger domain of Sec23/24 47 120 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Seca6g01595 777 CDD Sec23_C 625 745 IPR037550 GO:0030127|GO:0090114
Seca6g01595 777 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 6 776 IPR037364 -
Seca6g01595 777 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 636 776 IPR036180 -
Seca6g01595 777 Pfam Sec23/Sec24 beta-sandwich domain 402 506 IPR012990 -
Seca6g01595 777 SUPERFAMILY beta-sandwich domain of Sec23/24 8 519 - -
Seca6g01595 777 Gene3D Severin 635 739 IPR029006 -
Seca6g01595 777 FunFam Protein transport protein SEC23 128 401 - -
Seca6g01595 777 FunFam Protein transport protein SEC23 635 739 - -
Seca6g01595 777 Gene3D von Willebrand factor, type A domain 128 400 IPR036465 -
Seca6g01595 777 Pfam Gelsolin repeat 645 733 IPR007123 -
Seca6g01595 777 Gene3D Sec23/Sec24 helical domain 517 774 - -
Seca6g01595 777 SUPERFAMILY Helical domain of Sec23/24 520 635 IPR036175 GO:0006886|GO:0006888|GO:0030127
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01595 Seca-Chr6 68358724 68365643 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01595 K14006 - gmx:100813940 1405.96