Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01588 ATGGAGAATGTACTCACTCAGAGTCACACCCACTTTTGCTTGGCGTTGAACCCCAATAGCAGAGGGAGTAAGAGTAGAAACAGCAGCGTCTTTAGGAAACCCTTTGCGAAATTCACATCCCTCACCACTCGAATTGGCCATGCCTCTTTCGACCCATTACCGCCACTCACTGATTCAGTGTCAGATTCAAAACATACAACCCTTCTGGTTGAGACTTACCATGTCCATAACAGCCTCAGAAACTTACTCGCAAAGCTTGAGAAGGAAGATTCATGCCCACTCCACATACTCAGCGAAGTTGGAGATTGGTCCAAAGACCATTTCTGGGCCGTTGTTAGGTTTCTTAAAAAAGCCTCAAGATTCACCGAAATCCTTCAGGTGTTTGATATGTGGAAGAACATCGAGACATCACGGATTAATGAGCTTAATTATAACAAGATCATAAGCCTGTTATGTGAAGAAGGAATGATGGAAGGTGCGTTATCTGCATTGCAAGAGATGAAAATTCAAGGTCTCAAGCCTTCTTTAGACACTTACAATCCAATAATTCATGGATTATCCAGAGAAGGTAAATTCAGCGAGACTCTGCATTTTTTTGATGAGATGAAAAAGTTTGGTTTAGAACCAGACACGGAAACCTATGATGGTTTAATTCGAGCTTATGGGAAATTCCAAATGTATGATGAGATGGGCAAGTGTGTGAAAAAGATGGAATTGGATGGATGTTCACCTGATCACATTACTTATAATATACTTATTCAAGAGTATGCACAGGGTGGGCTACTCCAGAGAATGGAAAAGTTGTATCAAAGAATGCTTTCGAAAAGAATGCAGTTGCAATCTTCTACTTTAGTTGCAATGCTTGATGCTTATGCAATATTCGGGATTGTTGAAAAGATGGAAAAATTTTACAGAAAACTTTTGAACTCAAAAACATGTCTAGAGGATGATTTGATTAGAAAATTGGCTGAGGTTTATATCAAGAGCTACATGTTTTCTAGATTGGAGGACCTAGGACTAGAATTACGATCAGCTTTTGGTGAGAGTGATCTTGTGTGGTGTCTCCGTCTCCTTTCTTATGCATGTCTTTTGAGTCGAAAAGGTATGGATATAATTGTTCGAGAAATGCAAGATGCCAAAGCTCGTTTAAATGTTACTATTGCAAATATTATCATGCTGGCTTATATGAAAATGAGAGATTTCAAGCATTTGAGAATTTTTCTCTCCCAATTGCCAATCTATGGGGTGAAGCCTGATATAATCACTATTGGAATTCTATTTGATGCTGAGAGAATTGGTTTTGATGGTAGTGGTGCTTTAGAAACATGGAGAAGAATGGGATATCTTTACAGAATAGTAGAAATGAAAACAGATTCTCTGGTCCTTACTGCATTTGGGAAAGGTCATTTTCTTAAAAGCTACGAAGAAGTGTACTCCTCCCTTCACCCTCAGGATAGAGAAAAATCATGGACTTATTATGATCTCATTGCTTTATTGTCAAAACATATTGGTATTAAGGACTGTATGAAACCAAAATAA 1539 0.384 MENVLTQSHTHFCLALNPNSRGSKSRNSSVFRKPFAKFTSLTTRIGHASFDPLPPLTDSVSDSKHTTLLVETYHVHNSLRNLLAKLEKEDSCPLHILSEVGDWSKDHFWAVVRFLKKASRFTEILQVFDMWKNIETSRINELNYNKIISLLCEEGMMEGALSALQEMKIQGLKPSLDTYNPIIHGLSREGKFSETLHFFDEMKKFGLEPDTETYDGLIRAYGKFQMYDEMGKCVKKMELDGCSPDHITYNILIQEYAQGGLLQRMEKLYQRMLSKRMQLQSSTLVAMLDAYAIFGIVEKMEKFYRKLLNSKTCLEDDLIRKLAEVYIKSYMFSRLEDLGLELRSAFGESDLVWCLRLLSYACLLSRKGMDIIVREMQDAKARLNVTIANIIMLAYMKMRDFKHLRIFLSQLPIYGVKPDIITIGILFDAERIGFDGSGALETWRRMGYLYRIVEMKTDSLVLTAFGKGHFLKSYEEVYSSLHPQDREKSWTYYDLIALLSKHIGIKDCMKPK. 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01588 512 Coils Coil 262 282 - -
Seca6g01588 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Seca6g01588 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Seca6g01588 512 Pfam PPR repeat 247 276 IPR002885 -
Seca6g01588 512 Pfam PPR repeat 144 171 IPR002885 -
Seca6g01588 512 Pfam PPR repeat family 178 222 IPR002885 -
Seca6g01588 512 NCBIfam pentatricopeptide repeat 144 175 IPR002885 -
Seca6g01588 512 NCBIfam pentatricopeptide repeat 247 277 IPR002885 -
Seca6g01588 512 NCBIfam pentatricopeptide repeat 213 245 IPR002885 -
Seca6g01588 512 NCBIfam pentatricopeptide repeat 178 211 IPR002885 -
Seca6g01588 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 140 174 IPR002885 -
Seca6g01588 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Seca6g01588 512 Gene3D Tetratricopeptide repeat domain 331 504 IPR011990 GO:0005515
Seca6g01588 512 Gene3D Tetratricopeptide repeat domain 225 312 IPR011990 GO:0005515
Seca6g01588 512 Gene3D Tetratricopeptide repeat domain 71 223 IPR011990 GO:0005515
Seca6g01588 512 PANTHER OS08G0520200 PROTEIN 35 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01588 Seca-Chr6 68127998 68130274 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01588 99 446 Glycosyltransferase AT1G05670 21.703 2.01e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01588 - - gmx:100808924 801.971