Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01569 ATGTCATTGCCAATGGTGTCGTTTTGCCCTGTCATCTCTCACTTCTCCTTCCTCATTTTCTTTCCACTTTCAAACACTCCACATTTTGCTCGCCGCAACAACACGCTTCAATCTTTGTGCTCTCCTTTCCCACTCTCGCGCCACCGTTCACATTCCCTTCGAAAGAGTGCTAGTTTACGATGGGGGAGAGAGTCACCAAACACCAGGATCTGTGCTTCACTTACAGATGTTTCAGTGGAGGTAGCTGTAGAGGAAAAACAGCTTTCGAAAGGAGAAACTTGGTCTGTTCACAAATTTGGTGGAACCTGTGTGGGAAGCTCAGTGAGAATTAAAAATGTTGCAAATGTTATTATCAATGATGATTCTGAGAGGAAATTGGTGGTGGTTTCTGCTATGTCAAAAGTGACAGATATGATGTATGATCTCATCCACAAGGCTCAATCTCGTGATGAGTCTTATATTTCTGCATTGGATGCTGTTTTAGAGAAGCACAGCTCAACTGCACATGAGTTACTCCATGGAGATGATCTTGCTACTTTCTTATCACAGTTGCATCAAGATATCATTAACCTTAAGGCAATGCTTCAAGCCATATACATAGCTGGTCATGCAACAGAATCCTTCACTGACTTTGTTGTGGGACATGGGGAGTTATGGTCTGCACAGATATTGTCTTTTGTTATTAGGAAGAATGGAATTGACTGCAAATGGATGGATACAAGGGAAGTCCTTATTGTAAATCCTAATCGTTCTGATCAAGTTGATCCTGACTTCTTGGAATCTGAACAAAGACTTAAGAAATGGTACTCTCTTAATCCATCTAAGGTAATCATTGCTACTGGATTTATTGCAAGCACACCTCAAAACATTCCTACTACTCTCAAGAGAGATGGAAGTGACTTCTCGGCAGCAATTATGGGTGCTCTGTTCAGGGCTCGTCAGGTCACAATTTGGACAGATGTTGATGGTGTGTATAGTGCAGATCCTAGAAAAGTTAGTGATGCTGTGATTTTGAAGACATTGTCTTATCAAGAGGCATGGGAAATGTCTTATTTTGGTGCAAATGTCTTACATCCACGCACAATAATTCCAGTCATTAGATATGGCATACCTATCATAATAAGGAATATCTTCAACACCTCTGCTCCTGGAACTAAGATCTGCCATCCTTCTATCATTGGTGATGATGATAGGCAGACACTAACAAATTATGTCAAAGGCTTTACAACAATAGACAACTTGGCACTTGTAAATGTGGAGGGAACTGGAATGGCTGGTGTTCCAGGTACAGCCAGTGCTATTTTTAGTGCAGTTAAAGATGTTGGAGCTAATGTTATTATGATATCTCAGGCTAGTAGTGAGCATTCTGTGTGCTTTGCTGTGCCTGAGAAAGAAGTAAAAGCCGTTGCTCAGGCGTTGCAGTCTGTATTTCATAACGCTTTGGATGCTGAACGTCTTTCTCAGGTTGCTATCATTCCAAATTGCAGTATTTTGGCAGCTGTTGGCCAGAAAATGGCAAGTACTCCTGGAGTTAGTGCCACCCTTTTCAATGCATTGGCTCAGGCAAATATAAATATTCGTGCTATAGCACAAGGTTGTTCTGAGTACAATATTACAGTTGTCGTTAAGCGAGAGGATTCAATAAAGGCTTTACGGGCCGTGCATTCCAGATTTTATCTCTCAAGAACCACCATAGCAATGGGCATTATTGGACCTGGATTAATTGGAAGCACACTACTTGACCAGCTAAGGGATCAGGCCACAATTCTAAAAGAAGAATTAAACGTTGATTTACGTGTAATGGGCATCATGGGTACAAAGTCGATGCTCCTCGATGATTTGGGCATCAACTTAGTTAAATGGAGAGAACTTCGAGAGGAAAAAGGAGAAACGACTAATATGGAAAAATTTATTGAACATGTGCATGGAAATCATTTTATACCAAACACTGTAATAGTGGACTGCACTGCTGAGTCTGTCATAGCAAGCCACTACTATGAGTGGCTCCGCAAAGGAATACATATTATCACCCCAAATAAGAAGGCAAATTCAGGACCACTTAATCAGTATTTGACCTTAAGAGCTCTTCAGAGGCAATCATACACACATTACTTCTATGAAGCTACTGTTGGAGCTGGTCTTCCCATTATCAGCACTTTACGGGGCCTTCTTGAAACTGGTGACAAAATATTGCAAATTGAAGGCATTTTCAGTGGGACTTTGAGCTACATCTTCAATAACTTCAAAGATGGCCGGGTTTTTAGTGAGGTAGTTGCTGAAGCTAAGGAAGCAGGTTATACTGAGCCAGATCCAAGGGATGATCTGTCTGGAACTGATGTTGCTAGAAAGGTGATAATTCTTGCAAGGGAATCTGGCTTAAAGCTAGAGCTTTCTGATATTCCTGTTGAAAATCTTGTGCCAGAACCATTAAGAGTTACTGCATCAGCTAAAGAGTTTATGCAACAATTACCAAAATTTGACCAGGAGTTAACAAAGAAACAAGAAGATGCGGAGAGTGTTGGGGAAGTCTTGAGATACGTGGGAGTGGTAGACGTGACTAATCAAAAGGGGATGGTAGAGCTGAGAAGGTACAAGAAGGATCATCCATTTGCTCAACTATCTGGGTCAGATAATATTATTGCATTCACAACAAGAAGGTATAAGAATCAGCCTCTGATTGTTCGTGGACCAGGAGCAGGTGCCCAAGTAACAGCTGGCGGAATATTCAGTGACATTTTACAACTTGCCTCATATCTCGGTGCTCCATCATAG 2772 0.4138 MSLPMVSFCPVISHFSFLIFFPLSNTPHFARRNNTLQSLCSPFPLSRHRSHSLRKSASLRWGRESPNTRICASLTDVSVEVAVEEKQLSKGETWSVHKFGGTCVGSSVRIKNVANVIINDDSERKLVVVSAMSKVTDMMYDLIHKAQSRDESYISALDAVLEKHSSTAHELLHGDDLATFLSQLHQDIINLKAMLQAIYIAGHATESFTDFVVGHGELWSAQILSFVIRKNGIDCKWMDTREVLIVNPNRSDQVDPDFLESEQRLKKWYSLNPSKVIIATGFIASTPQNIPTTLKRDGSDFSAAIMGALFRARQVTIWTDVDGVYSADPRKVSDAVILKTLSYQEAWEMSYFGANVLHPRTIIPVIRYGIPIIIRNIFNTSAPGTKICHPSIIGDDDRQTLTNYVKGFTTIDNLALVNVEGTGMAGVPGTASAIFSAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAQALQSVFHNALDAERLSQVAIIPNCSILAAVGQKMASTPGVSATLFNALAQANINIRAIAQGCSEYNITVVVKREDSIKALRAVHSRFYLSRTTIAMGIIGPGLIGSTLLDQLRDQATILKEELNVDLRVMGIMGTKSMLLDDLGINLVKWRELREEKGETTNMEKFIEHVHGNHFIPNTVIVDCTAESVIASHYYEWLRKGIHIITPNKKANSGPLNQYLTLRALQRQSYTHYFYEATVGAGLPIISTLRGLLETGDKILQIEGIFSGTLSYIFNNFKDGRVFSEVVAEAKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLELSDIPVENLVPEPLRVTASAKEFMQQLPKFDQELTKKQEDAESVGEVLRYVGVVDVTNQKGMVELRRYKKDHPFAQLSGSDNIIAFTTRRYKNQPLIVRGPGAGAQVTAGGIFSDILQLASYLGAPS. 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01569 923 Pfam Homoserine dehydrogenase 715 913 IPR001342 GO:0006520
Seca6g01569 923 NCBIfam aspartate kinase 94 558 IPR001341 GO:0004072|GO:0008652
Seca6g01569 923 Gene3D - 94 390 IPR036393 -
Seca6g01569 923 SUPERFAMILY ACT-like 404 478 IPR045865 -
Seca6g01569 923 FunFam Bifunctional aspartokinase/homoserine dehydrogenase 566 742 - -
Seca6g01569 923 FunFam Bifunctional aspartokinase/homoserine dehydrogenase 402 560 - -
Seca6g01569 923 ProSitePatterns Aspartokinase signature. 96 104 IPR018042 GO:0004072|GO:0008652
Seca6g01569 923 Pfam ACT domain 493 556 IPR027795 -
Seca6g01569 923 Pfam Amino acid kinase family 95 376 IPR001048 -
Seca6g01569 923 FunFam Bifunctional aspartokinase/homoserine dehydrogenase 726 897 - -
Seca6g01569 923 Pfam ACT domain 423 477 IPR002912 -
Seca6g01569 923 CDD AAK_AK-HSDH 94 388 IPR041743 -
Seca6g01569 923 ProSitePatterns Homoserine dehydrogenase signature. 761 783 IPR019811 GO:0006520
Seca6g01569 923 ProSiteProfiles ACT domain profile. 500 577 IPR002912 -
Seca6g01569 923 SUPERFAMILY Carbamate kinase-like 94 389 IPR036393 -
Seca6g01569 923 Gene3D - 402 560 - -
Seca6g01569 923 Pfam Homoserine dehydrogenase, NAD binding domain 571 707 IPR005106 GO:0016491|GO:0050661
Seca6g01569 923 CDD ACT_AKi-HSDH-ThrA_2 495 560 - -
Seca6g01569 923 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 715 900 - -
Seca6g01569 923 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 563 737 IPR036291 -
Seca6g01569 923 Gene3D Dihydrodipicolinate Reductase; domain 2 726 897 - -
Seca6g01569 923 PANTHER - 77 923 IPR011147 GO:0004072|GO:0004412|GO:0009067
Seca6g01569 923 CDD ACT_AKi-HSDH-ThrA-like_1 414 493 - -
Seca6g01569 923 FunFam Bifunctional aspartokinase/homoserine dehydrogenase 93 390 - -
Seca6g01569 923 ProSiteProfiles ACT domain profile. 419 488 IPR002912 -
Seca6g01569 923 SUPERFAMILY ACT-like 484 574 IPR045865 -
Seca6g01569 923 Gene3D - 566 915 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01569 Seca-Chr6 67513142 67533559 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01569 K12524 - gmx:548017 1505.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01569 6 67513142 67533559 Seca6g01569 6 67513142 67533559 ECH