Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01439 ATGAGTTTATCATTTTCAGTGGCAGCAAAGCCTTCCACCATTTGGAGCAACAGCAGACCATGTTGTAGAAGATTTGATGTTATAAGGTCAGAAGTAACCATGGCTCCCAAACAAAGAACAGAGAGCATGTTTCCTCAGTTATCAAAAAGAGGAGTTCCTCTTGCTGATTTACATGTACAAGAGGTTGTTGAGAGGCAGTCTCTGGCAGCTAATTTTGCTACTCTAAATCCTTGTAGTAAGCCACAATTTGAGCCTAGTTTTCTCAATGATGCCTATGAAATGTGCAGAAAAATCTGTGCTGAATATGCCAAGACCTTCTATCTAGGAACTTTGCTTATGACAGAAGAAAGACAGAAAGCTATATGGTCTATTTATGTTTGGTGCAGGAGGACAGATGAACTAGTTGATGGTCCTAATGCTGCTTATATGAGCTCTGCTGTTCTTGATAGGTGGGAAGAAAGACTGCATGATATTTTCAATGGACACCCTTATGATATGCTTGATGCTGCTCTTACTGATACAGTCTCCAAGTTTCCCTTGGATATTAAGCCTTTCAGGGATATGATAGTAGGTATGAGAATGGATACAAGGAAAACCCGATACAAAAGTTTCGAGGAGTTATATCTTTACTGTTACTATGTAGCTGGAACTGTTGGATTGATGAGTGTTCCAATAATGGGTATAGCCCCAGAGTCTCTTATCTCTGCTCAAAGTGTATATAAAGCAGCACTATATTTGGGTATTGGAAATCAATTGACAAACATTCTTAGAGATGTGGGGGAGGATGCATTAAGAGGTAGAGTCTACCTTCCCCAAGATGAACTTGCCCAATTCGGTTTATGTGATGAGGACGTTTTCTCAAGAAAGGTCAGTGAAAGATGGAAAGAGTTCATGAAGCAGCAGATTACAAGGGCAAGATTCTACTTCAACTCAGCAGAAGAAGGAGCTTCTCAGCTTGAAAAGGCCAGCCGTTGGCCGGTTTGGTCCTCATTAATATTGTATCGTAAGATATTGGATGCAATTGAAGACAACGATTACGACAATTTGACAAAACGAGCGTATGTAGGACGAACTAAGAAATTTTTGACGTTGCCTTTAGCCTATACTAGATCTCTCTCAAATCCCAAAACGAAATTTCATCCTTCTTCCGTGACAAGGCTCATCTAG 1167 0.4027 MSLSFSVAAKPSTIWSNSRPCCRRFDVIRSEVTMAPKQRTESMFPQLSKRGVPLADLHVQEVVERQSLAANFATLNPCSKPQFEPSFLNDAYEMCRKICAEYAKTFYLGTLLMTEERQKAIWSIYVWCRRTDELVDGPNAAYMSSAVLDRWEERLHDIFNGHPYDMLDAALTDTVSKFPLDIKPFRDMIVGMRMDTRKTRYKSFEELYLYCYYVAGTVGLMSVPIMGIAPESLISAQSVYKAALYLGIGNQLTNILRDVGEDALRGRVYLPQDELAQFGLCDEDVFSRKVSERWKEFMKQQITRARFYFNSAEEGASQLEKASRWPVWSSLILYRKILDAIEDNDYDNLTKRAYVGRTKKFLTLPLAYTRSLSNPKTKFHPSSVTRLI. 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01439 388 Gene3D Farnesyl Diphosphate Synthase 85 366 IPR008949 -
Seca6g01439 388 ProSitePatterns Squalene and phytoene synthases signature 1. 210 225 IPR019845 GO:0016765
Seca6g01439 388 FunFam Phytoene synthase chloroplastic 84 366 - -
Seca6g01439 388 Pfam Squalene/phytoene synthase 102 357 IPR002060 GO:0009058
Seca6g01439 388 CDD Trans_IPPS_HH 93 360 IPR033904 GO:0004311
Seca6g01439 388 SFLD Squalene/Phytoene Synthase Like 89 371 IPR002060 GO:0009058
Seca6g01439 388 SFLD Phytoene synthase like 89 371 IPR044843 GO:0004311
Seca6g01439 388 ProSitePatterns Squalene and phytoene synthases signature 2. 246 271 IPR019845 GO:0016765
Seca6g01439 388 PANTHER BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE 39 374 - -
Seca6g01439 388 SUPERFAMILY Terpenoid synthases 90 373 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01439 Seca-Chr6 63726745 63730836 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01439 K02291 - gmx:100782394 610.142