Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01421 ATGACTGCTGAGTTTGATTCAACGTATGCTCCTGAACCTCACAAGATGTCTCGAGCTTCATCTGCAGCACCCACTAGTGGCCAAAAGCCATCTATGTTTGCTGCCAAATCTGGATTTGTCATCCCCAAAAACAAATTATCAGGTTCTTTGGTCCCTATTTTCCGAGGGGCTAAAAAACGTGGGGTTACTGGAGCCATCAATGAAGAAAGTTCAAAACAAATTGAGAGGAGCTCAAAATGGGGACCTGACCTGACACAGGATGCAGCTGTCAAGAGGGGAAAGGCTTTGGCTTTGCAGATTCGAGTGGATCAAATTACAAAGCAGTTGGAATCAGAAAAATTGGAGATTGAGGACACACAGAATTTGCCGTTAGTGGCTGAGGATCCAGATCAAAGCAAGCCTGGCTCTCAAATTAACAAGAAGTCAGAAATGCTTGAACTTGAAAAGCGAGAAGCAATAGGTGAAATACTAAAATTAGATCCCAGTTACAAGCCTCCACCTGGTTTTACACCATTGTTAAAAGAAGCCAGCGTTCCTTTGCCTGTCCAAGAATATCCTGGGTACAAATTTATTGGTCTAATATATGGGCCTGAAGGTGATAATCAAAAGCGACTAGAAAAGGAAACTGGTGCCAAGATAAAAATCCATGGAACCAAAGCAGACACAGGAGACACAGGTGAAATTAAACCAGGATCTGATATGCAGTGCAGTTACAAAGAGATGCATGTTAACATATCAGCTGATAGTTTTGACAAAGTGGATGCTGCAGTGTCCATCATTGAACTACTAATTACCTCTGTAACTGTTCAGGGGAACTCAGCTGCTGGTTTTACACCTTCTGTATCTGTTTCTGGTGACAGCACTAATGTTCTGAGTCAAAGCCAAGATGGGGCCACTTCTCATGCAGTTTCTCTATCTTTGGAAAACCAGGCTGTGTTGCAACCAGCAGTCATTACACAAAATCCTGTAGATCACTTTCAATACGCAGGTCCATGGTTTTCAGCAGCTTCATCTCATACCCCTTTATTTTCTTCTTCTGGCAGTATAGTGTCTCCAAATCCACCAGGTCTTGCTAGAACTCCCCACTTTCCATCACAGACAATGAATCCTTCAAACACAGCTTCAGCTTTTGGTTCTCAACCTGTACCTGTTGCTGGATTACACCCTATCATTCCAAATCAACATGTTTCTATGCAAGGACCACCATCAAGACAGATTTTACAGCAGTCGCATATGACTCAGGCAAGTCCTTTAGGTCACATTGGGCAACCAAGAAATCCTTCTATGATATCTGTACTAAATTTATCAGCTCCAACAAATGCTTCAACTTCATTTCCAGTTACTTTAAGCCAACCAACACCAATAGGACAACTTAAGACACCAGTGTCTTTGATGCCTCAACCTATGTCTGGTATATCACCATCACCAATGCCTAACCACCCATTGACCCCACTGGGGGTATCTTCTGGACAGAGTGGAGGACCTGTCACAGTTCAAATGTCTGTTGGTCTCAGCAATGTGGGGCCCATGGCTCCACCAGCAGTTCCTCCTACAAGACCTGTTTCTCTAGGTCCACAACCGGATGTTGCATTTAAGCCCCCACAGTCAAATATGCTAATTACGCCACGATCTTCCACTTTTCCTCCACATCAAGCTGGAATTTCCCCTCGACCACCATCATCTTTGGGACCAATGCCTCCACCAATACCTGCACCTACTCATTCATCTGTGAACCATTTATCTGGACCTGTTTCATTTCCTTCGCCAGGATTATCACCTTCTCTTCCATTACCTCGGCAATCAGGAATGCCTAATTCTGCTTCTGGAGTTACTCCTTATCACACACATGTAAAACCACCAGTCTTGATGACTTCGAATTCTGGAAATTTTACTTTTCAATCACTGGGGCCCGATGCAGACTACTGTCAAGTGGTTTCCAGACCAAACAGTCAAGCAACTACTCAGGGTGTTATACAAGAGCCACCTTCTGGTCCACGGCCACCACCATTTGGGTTAGCTGTGCCTGATCAGCCTCTTCAAATGTTTCCAAGGACACAAGTCCCCAGCCAGGTGAATCAAACTCATAGTCATGTGTCTGCTATTCCCTTTGGGGGGAGATCAGGTTCTGTTTCAATTCCACCCAGACACACTGTATTTCCATATGCTGGTCAACCTTCACCTAGATCTCCAGTCCCACCAATAGGCATGAAGAACTTCATTTCTGCCCCTCAAATGCCAAACTTGCCCACTCCTGGTGCCCGAAGTGGCATGCACATTGGACAAAGCTATCCTGCTCAGAGAACATGGTCAGATATCCCAATGCCTCTGAATCAGAAGTTTGGCAACAATCCCTCTGTGGCTTCTAGTAAGCCGGCATATCCTGCGGACCAAATTTATGATCCCTTTTCACCCACTTCTGTTGCACCTCCACAACAGAGAGGTAATCCTGGAAAATGA 2457 0.4477 MTAEFDSTYAPEPHKMSRASSAAPTSGQKPSMFAAKSGFVIPKNKLSGSLVPIFRGAKKRGVTGAINEESSKQIERSSKWGPDLTQDAAVKRGKALALQIRVDQITKQLESEKLEIEDTQNLPLVAEDPDQSKPGSQINKKSEMLELEKREAIGEILKLDPSYKPPPGFTPLLKEASVPLPVQEYPGYKFIGLIYGPEGDNQKRLEKETGAKIKIHGTKADTGDTGEIKPGSDMQCSYKEMHVNISADSFDKVDAAVSIIELLITSVTVQGNSAAGFTPSVSVSGDSTNVLSQSQDGATSHAVSLSLENQAVLQPAVITQNPVDHFQYAGPWFSAASSHTPLFSSSGSIVSPNPPGLARTPHFPSQTMNPSNTASAFGSQPVPVAGLHPIIPNQHVSMQGPPSRQILQQSHMTQASPLGHIGQPRNPSMISVLNLSAPTNASTSFPVTLSQPTPIGQLKTPVSLMPQPMSGISPSPMPNHPLTPLGVSSGQSGGPVTVQMSVGLSNVGPMAPPAVPPTRPVSLGPQPDVAFKPPQSNMLITPRSSTFPPHQAGISPRPPSSLGPMPPPIPAPTHSSVNHLSGPVSFPSPGLSPSLPLPRQSGMPNSASGVTPYHTHVKPPVLMTSNSGNFTFQSLGPDADYCQVVSRPNSQATTQGVIQEPPSGPRPPPFGLAVPDQPLQMFPRTQVPSQVNQTHSHVSAIPFGGRSGSVSIPPRHTVFPYAGQPSPRSPVPPIGMKNFISAPQMPNLPTPGARSGMHIGQSYPAQRTWSDIPMPLNQKFGNNPSVASSKPAYPADQIYDPFSPTSVAPPQQRGNPGK. 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01421 818 MobiDBLite consensus disorder prediction 545 594 - -
Seca6g01421 818 MobiDBLite consensus disorder prediction 768 818 - -
Seca6g01421 818 FunFam Splicing factor-like protein 1 isoform A 174 279 - -
Seca6g01421 818 PANTHER RNA-BINDING PROTEIN RELATED 28 660 IPR045071 -
Seca6g01421 818 Gene3D K Homology domain, type 1 170 294 IPR036612 GO:0003723
Seca6g01421 818 SMART kh_6 172 265 IPR004087 GO:0003676
Seca6g01421 818 MobiDBLite consensus disorder prediction 552 573 - -
Seca6g01421 818 Gene3D - 90 166 IPR047086 -
Seca6g01421 818 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 176 270 IPR036612 GO:0003723
Seca6g01421 818 Pfam KH domain 189 260 IPR004088 GO:0003723
Seca6g01421 818 MobiDBLite consensus disorder prediction 1 31 - -
Seca6g01421 818 MobiDBLite consensus disorder prediction 574 588 - -
Seca6g01421 818 MobiDBLite consensus disorder prediction 768 790 - -
Seca6g01421 818 Coils Coil 102 122 - -
Seca6g01421 818 ProSiteProfiles Type-1 KH domain profile. 189 260 - -
Seca6g01421 818 MobiDBLite consensus disorder prediction 804 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01421 Seca-Chr6 63101992 63107920 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01421 K13095 - gmx:100777227 1088.94