Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01418 ATGGATTTCGTGGAATTGGAGGCGGTGGAAGGCCTCCGGTGGTCGTGGAATTCATGGCCGGTAACTTCCAAATCGGAACTCATAATCCCTCTCAGCATCATGTGTACTCCCTTGATGCAAGCCCAAGCCACAGAACTTCCCCTTCTTCCTTACGATCCCCTCCTCTGCACCCGATGCGGCGCCGTTTTGAACCCCTACGCTCGCCTTGACTACCAGTCCCGCATTTGGCACTGCCCTTTCTGCTCTCAAAGAAACCCTTTCCCTCGTTCCATCGCTGATACCAATCTCCCCGCTGAGCTCTTCCCTACCTACACCACTGTCGAGTACTCTCCTTCTTCCTCCTCCTTCCTTCCCCCTGGGATTGGACCCGCTTTTGTCTTCGTCGTCGATATCTCCACTTCCGAGGATGAACTCCGTCTACTTAAGAATGAGCTCTTGCTTCTTCTCCACCATTTGCCTGATAACGCTTTCGTCGCTTTGGTTACCTTCGATTCCATGGTCTATCTCCATGATCTCCGATATTCTCACTGTTCTAGGCTTGTCATCTTCCACGGTGAACGCCAATTCTCCTCCAATCAGATCCGGAAGTTCCTTAACACCAGCCGCCCCCACCAGCTGCATCTTGGACAAACACCACCTGTCCCTAAGCAAGGATTTTTGTTGCCAATTACAGAATGTGAGTTCAGTATCACTGCTGCAATTGAAGACATCCATTCTACTTGCAACATCAGGTCTGGCAGCCGCCCACCAAGGTCGACAGGGGCTGCAATTTCAATTGCCCTTGGACTTTTGGAGTGTTGCCTTATAAATACAGGCTCCAGGATCATGCTCTTCACATCTGGACCAGCTACTCTGGGACCAGGACTTGTTGTAGACTCTGATCTCCGCCATAGCATCAGAACCCACCATGACATCTTCAATGGGCAGGCAAGACACCATGCAAAATCTTGCAGTTTCTACAAACAGATCTCCAAGAGGCTATCTGATGGATCTGTTATTCTTGATCTGTTTGCTTGCTCCCTTGACCAAGTTGGAGCAGCTGAGCTTCGAGAACCTGTTGAGCGCTCGGGTGGATTTATGATTCTTGCTGATTCTTTTGAATCGGATCAATTCAGGAAATGTCTCAGGCACTTATTTAAACGCGATGATGAGGGCTATTTGAAAATGAATTTTGATGCAACCATTGAAATTGTGACCACTAAAGATGTGAAAATCTGTGGAGCACTTGGTCCTTGTGTGTCTCTAAGAAAAAAGAACAGTTTAGTAAGTGATGCTGAGGTTGGACAAGGTGGTACCTGTATGTGGAAGTTGAATACACTAACTGACAGAACTTGCATTGCTTTTTTCTTCCAAGTGAATGATGAACAGAAAATTCAACCCGGCTCTGCATTTTTAGTTCAGTTTATAACACGATACAGGCAGGGGAACATGGGACTCCGGAAAAGAGTCACCACTGCTGCAAGACGATGGGTTGCAAACCATTCCACAGATATTGCTGCTGGGTTTGATCAAGAAGCAGCAGCTTCAGTTATGGCAAGACTAGCTATTCTCCGGGCAGAGACATGCTATGCCCGTGATGTCATTAGATGGCTTGATGACACTCTTATCCGTTTTACATCCAAGTTTGGGGACTATGTGCCTGAAGATCCTTCTTCATTCCGCCTATCTTCCAACTTTTCCCTTTATCCCCAGTTTATGTTCCACTTAAGGCGATCTCAATTTATTGATGTCTGTAACACCACTCCTGATGAAACTGCATATTTCCGGCTTATGCTGAACCGTGAGGGAGTAGTGGGCTCTCTTATAATGATTCAACCTACACTTTTCCAATATTCGTTTGATGGACCACCTGTTCCTGTACTTCTAGACATTCGTTCCATCAGTCCTGATTCTATCTTGCTCTTTGATTCTTTCTTCCATGTGGTGATTCATTATGGGTCCAAGATTGCTCAGTGGAAGAAGCTTGGTTATGAAAGGGACCCAAATCATGAGAACTTTAGAAAGCTATTGGAAGCCCCAGAACTGGATGCGGAGCAATTGGTTGCTGAACGGGTTCCAGTGCCAAAGATTATAAGGTGTGACCAGTATAGTAGTCAAGCTAGGTTTCTTCTTGCCAAGTTGAATCCATCTGTTACTCAAAATTCAACATACACGGATGGTTCGGATATTATCTTTACTGATGACTTGAGCTTGCAAGTTTTTCTAGATCAATTGCAGGTACTGGCAGTGCAAGGCTGA 2238 0.4616 MDFVELEAVEGLRWSWNSWPVTSKSELIIPLSIMCTPLMQAQATELPLLPYDPLLCTRCGAVLNPYARLDYQSRIWHCPFCSQRNPFPRSIADTNLPAELFPTYTTVEYSPSSSSFLPPGIGPAFVFVVDISTSEDELRLLKNELLLLLHHLPDNAFVALVTFDSMVYLHDLRYSHCSRLVIFHGERQFSSNQIRKFLNTSRPHQLHLGQTPPVPKQGFLLPITECEFSITAAIEDIHSTCNIRSGSRPPRSTGAAISIALGLLECCLINTGSRIMLFTSGPATLGPGLVVDSDLRHSIRTHHDIFNGQARHHAKSCSFYKQISKRLSDGSVILDLFACSLDQVGAAELREPVERSGGFMILADSFESDQFRKCLRHLFKRDDEGYLKMNFDATIEIVTTKDVKICGALGPCVSLRKKNSLVSDAEVGQGGTCMWKLNTLTDRTCIAFFFQVNDEQKIQPGSAFLVQFITRYRQGNMGLRKRVTTAARRWVANHSTDIAAGFDQEAAASVMARLAILRAETCYARDVIRWLDDTLIRFTSKFGDYVPEDPSSFRLSSNFSLYPQFMFHLRRSQFIDVCNTTPDETAYFRLMLNREGVVGSLIMIQPTLFQYSFDGPPVPVLLDIRSISPDSILLFDSFFHVVIHYGSKIAQWKKLGYERDPNHENFRKLLEAPELDAEQLVAERVPVPKIIRCDQYSSQARFLLAKLNPSVTQNSTYTDGSDIIFTDDLSLQVFLDQLQVLAVQG. 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01418 745 Gene3D Sec23/Sec24 helical domain 500 742 - -
Seca6g01418 745 Pfam Sec23/Sec24 trunk domain 123 381 IPR006896 GO:0006886|GO:0006888|GO:0030127
Seca6g01418 745 Gene3D - 6 488 - -
Seca6g01418 745 Gene3D Severin 605 709 IPR029006 -
Seca6g01418 745 Pfam Sec23/Sec24 helical domain 503 599 IPR006900 GO:0006886|GO:0006888|GO:0030127
Seca6g01418 745 SUPERFAMILY Zn-finger domain of Sec23/24 46 118 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Seca6g01418 745 Gene3D - 50 106 - -
Seca6g01418 745 FunFam Protein transport protein SEC23 122 389 - -
Seca6g01418 745 SUPERFAMILY vWA-like 123 381 IPR036465 -
Seca6g01418 745 Gene3D von Willebrand factor, type A domain 122 389 IPR036465 -
Seca6g01418 745 Pfam Gelsolin repeat 617 703 IPR007123 -
Seca6g01418 745 SUPERFAMILY beta-sandwich domain of Sec23/24 2 502 - -
Seca6g01418 745 FunFam Protein transport protein SEC23 50 106 - -
Seca6g01418 745 SUPERFAMILY Helical domain of Sec23/24 503 605 IPR036175 GO:0006886|GO:0006888|GO:0030127
Seca6g01418 745 Pfam Sec23/Sec24 beta-sandwich domain 391 491 IPR012990 -
Seca6g01418 745 FunFam Protein transport protein SEC23 388 488 - -
Seca6g01418 745 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 606 744 IPR036180 -
Seca6g01418 745 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 3 744 IPR037364 -
Seca6g01418 745 CDD Sec23_C 595 715 IPR037550 GO:0030127|GO:0090114
Seca6g01418 745 FunFam Protein transport protein SEC23 605 709 - -
Seca6g01418 745 Pfam Sec23/Sec24 zinc finger 53 89 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01418 Seca-Chr6 62765848 62769189 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01418 K14006 - gmx:100784000 1158.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01418 6 62765848 62769189 Seca6g01418 6 62765848 62769189 ECH