Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01387 ATGGCTTCTCCACCAGACACGAGCAAAACCATAAAGCTAGAACGTTACAACAGTTACATCCGCAGAGTCAACAGCACAAAGCTCTTAAACGCTTCCTCAAAACTCCTCTTCCGCGCCACACTCCTCATAGCACTCGTCCTTGTCTTCCTCTTCACCTTCAACTACCCTCCACTCTCTGACACCACCACCTCCCACCACCACCTCCACACCACCAATTTCCTCTCCTCCGCATTCGGCGGCGGCGCCGCCTGGGAGAAGCAAGTCCGTCACTCCTCCACCCCTCGCCGACCAAACGGCATGTCGGTGCTGGTAACCGGCGCAGCCGGTTTCGTCGGTACTCACTGTTCCCTCGCTTTAAAGAAACGAGGCGACGGCGTTTTAGGTCTCGATAATTTCAACACCTATTACGACCCGTCGTTGAAGCGCGCGAGGCAAGCTTTACTTTCTAAACACCAGGTGTTCATTGTCGAGGGTGACTTAAACGACACGCCGTTGCTAACGAAACTCTTCGACGTCGTTCCGTTCACTCACGTCCTCCACCTCGCAGCACAAGCCGGTGTTCGTTACGCCATGCAGAATCCTCAATCGTACGTCAAGTCCAACATCGCCGGTTTCGTGAACCTTCTAGAAGTTTCGAAATCCGCAAACCCCCAACCTTCCATTGTTTGGGCCTCGTCAAGTTCCGTTTACGGTCTCAACACTGAGAATCCGTTCTCGGAGCTTCACCGGACAGATCAACCGGCGAGCCTCTACGCCGCGACGAAGAAAGCCGGCGAGGAAATCGCGCATACTTATAACCATATCTACGGTCTTTCCCTCACCGGATTGCGGTTCTTCACCGTGTACGGTCCTTGGGGAAGACCTGACATGGCTTACTTTTTCTTCACGAAGGACATCCTCCAGGGGAAGACGATTGATGTTTACCAGACGCAGGAAGGGAAAGAGGTGGCGCGTGATTTCACGTTCATTGACGATATCGTGAAAGGATGCGTAGGTGCGCTTGATACGGCGGAGAAGAGCACCGGAAGTGGCGGAAAGAAGAAAGGACCGGCTCAGTTGAGGATCTACAATCTCGGCAACACTTCGCCGGTGCCGGTGGGGAAGCTTGTGTCGATTTTGGAAGGGTTGTTGAACACGAAGGCGAAGAAACACATCATCAAGATGCCGCGAAACGGTGACGTACCGTATACGCACGCGAATGTGACATTGGCTTATAGGGATTTCGGGTACAAACCAACCACGGATCTTGCTACCGGGTTGAGGAAGTTCGTGAAGTGGTACGTTCGTTATTATGGGATTGAGTCGAGGGTAAAAAAGGAAAATCACCTTGATAATGAGCAACCCGAGGATTCCGCTTGA 1359 0.5261 MASPPDTSKTIKLERYNSYIRRVNSTKLLNASSKLLFRATLLIALVLVFLFTFNYPPLSDTTTSHHHLHTTNFLSSAFGGGAAWEKQVRHSSTPRRPNGMSVLVTGAAGFVGTHCSLALKKRGDGVLGLDNFNTYYDPSLKRARQALLSKHQVFIVEGDLNDTPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVKSNIAGFVNLLEVSKSANPQPSIVWASSSSVYGLNTENPFSELHRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYQTQEGKEVARDFTFIDDIVKGCVGALDTAEKSTGSGGKKKGPAQLRIYNLGNTSPVPVGKLVSILEGLLNTKAKKHIIKMPRNGDVPYTHANVTLAYRDFGYKPTTDLATGLRKFVKWYVRYYGIESRVKKENHLDNEQPEDSA. 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01387 452 PANTHER EPIMERASE-RELATED 84 434 - -
Seca6g01387 452 Gene3D - 103 414 - -
Seca6g01387 452 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 94 434 IPR036291 -
Seca6g01387 452 Pfam NAD dependent epimerase/dehydratase family 102 340 IPR001509 -
Seca6g01387 452 FunFam UDP-glucuronate 4-epimerase 3 101 432 - -
Seca6g01387 452 Gene3D - 279 427 - -
Seca6g01387 452 PRINTS Nucleotide sugar epimerase signature 318 333 - -
Seca6g01387 452 PRINTS Nucleotide sugar epimerase signature 393 410 - -
Seca6g01387 452 PRINTS Nucleotide sugar epimerase signature 353 368 - -
Seca6g01387 452 PRINTS Nucleotide sugar epimerase signature 128 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01387 Seca-Chr6 61923833 61925191 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01387 1 452 Miscellaneous Gene Families AT3G23820 80.519 0.0 759
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01387 K08679 - zju:107422361 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01387 6 61923833 61925191 Seca6g01387 6 61923833 61925191 ECH