Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01385 ATGAGTACGGTTGATAAGATGTTGATCAAAGGTATCCGGAGCTTCGACCCGGAGAACAAGAACGTCATCACCTTCTTCAAGCCCTTAACCCTAATCGTTGGTCCCAACGGTGCTGGCAAAACCACAATCATAGAATGCTTGAAGCTTTCCTGCACCGGTGAGTTGCCTCCTAATGCCAGGTCTGGCCACAGCTTCATTCACGACCCCAAGGTTGCCGGCGAAACTGAAACCAAAGGACAGATTAAGCTCCGGTTTAAAACCGCCGCCGGAAAAGACGTGGTTTGCATAAGGTCCTTTCAGCTCACGCAAAAAGCCTCCAAGATGGAATACAAGGCTATTGAGAGCGTCCTTCAAACTATTAACCCTCACTCTGGCGAGAAAGTTTGTCTTAGCTATAGATGCGCTGATATGGATCGAGAGATTCCTGCGCTCATGGGAGTTTCAAAGGCCATTTTGGAAAATGTTATATTTGTTCATCAAGATGAAGCCAATTGGCCACTACAGGATCCTTCCACCTTAAAGAAGAAATTTGATGATATCTTTTCGGCGACACGATACACAAAGGCACTGGAGGTCATAAAGAAACTTCATAAAGATCAGGCTCAAGAGATAAAGACTTACAAGCTAAAACTGGAAAATCTTCAGACTCTGAAAGATGCTGCTTATAAGCTTCGGGAAAGCATTGCACAGGATCAGGAGAAAACAGAATCTCTAAAAGGTCAGATACAACAGTTGGATGGAAGTATTGAAGATTTGGATACTAAAATTCATCACACAGAAAAAACATTGAAAGATTTACTGGAGCTGCAGAAGCAGATAACAACTAAAACTGCACAACGAAGCACTCTGTTTAATGAACAGCAGAAAAAATATGCTGCTCTTGCTGAGGAGATTGAAGACACTGATGAGGAGTTGATGGAATGGAAGACCAAATTTGAAGAAAACATTGCAATTTTACAGACAAACATAAGCAAGTTGGAAAGAGAGATGGATGACACTGACAAGAAAAGTTCTATCCTTAAGAAGACCATAGAAGATTCCATCTGGGTTATTAGCAAGCTACAAACTGAAGCAGAAGCTCACATGTCTTTGAAGAATGAACGTGATTCCTCCATTCAAAATCTTTTTGCTAAGTATAACTTAGGGTCTCTTCCAAAGTCCCCCTTCAGTGATGAGGTTGCTTTAAACCTCACTAATCGTGTAAAATCAAGGTTGGGAGATCTTGTGAAGGATTTGGAAGATAAAAAGAAAGCAAATGACAATGAACTCAATGTGGCATGGAAAAGCTACATGGAAGCAAATGACTATTGGAAAAGTACCGAGGCTACAAAAGAAGCTAAGACAGTGATCAAGAGTGACCTTATAAAGCGCATTGAAGAGAAGAAAAATGAGCGCGATTCATTTGAACTTCAAATATCTAATGTAGATTTTTCTCGTATAGATGAAAGAGAAAGAAATTTGCAAATTGAGCTTGAGAGGAAGACAAAGCAACTTGCTGAAAGAGAATTTGAACCAAATATACGTCAAATGCAAAGTGAGCTATATAGTGTAGATCAAAAGATTAAGGCTGTCAATCGAGAGAAGGATATCATGGCTTCTGATTCAGAGGACAGAGTGAAGCTATCTGTCAAGAAGGCAGAGTTGAAGAATCAGAAGGAGAAACATAAAAAGATAATTGATGGCCAAAAGGATAAAATAAGAAGGGTGCTAAAAGGGAGGGTTCCTCCTGATAAGGACGTGAAGAAGGAAATTACACAAGCATTAAGGGCCGTTGGAGCTGAATTTGATGACATGAATGCAAAGTACCGTGAAGCTGAGAAGGAAGTGAATATGTTGCAGATGAAAATACAAGAAGTTAATAATAAACTCTCCAAGAGCCACAAGGATTTGGAATCAAGAAAGAGATTTATTGAATCCAAGCTTCAGTCCTTGGATCCACAATGTTCTGGGATTGACTCTTATCTCAAAGTTTTAGAGACTTCCAAGGAGAAAAGAGACGTACAGAAAAGCAAATATAACATTGCTGATGGTATGCGACAAATGTTTGATCCTTTTGAAAGGGTTGCCAGAGCTCATCATATTTGCCCTTGCTGCGAGCGCCCTTTCTCTGCAGAAGAAGAAGATGATTTTGTTAAGAAGCAAAGAGTGAAGGCTGCTAGTTCAGCTGAACATATGAAAGTTCTGGGTGTTGAGTCCTCAAATGCAGACTCTCATTATCAGCAGTTGGACAAGCTTCGTCTGTTTTATGAAGAATATCTTAAACTTAGCAAGGAGACAATCCCTAACACCGAAAAGGAACTCCAGCAACTTGAGGAAGAGCTGGATCACAAGTCTCAGGCCCTGGATGATGTTTTAGGTGTTTTAGCTCAAGTGAAGACTGACAAGGATTCAGTTGAGGAATTGGTGCAGCCTGTTGAAAATGCTGACCGGCTTTTCCATGAAATTCAAGCTATGCAAAAGCAAGTTGAGGAATTAGAATATAAGCTTGATTTTCAAGGACCAGGAGTGAGGACTCTGGAAGAAATTCAATTGGAGCTTAATGCATTGCAGGGCACAAAGGACAATTTGCATACTGAATTGGAAAAGTTGAGGGAAGAACAGAGGCATTTGGAGAATGATCGGATAAATATTCAAATACGATGGCATACTGCAAGGGAGGAGAAACTCAAAGCAACTAAAACATTGGAAGCTTTTAAAAGATTAGAAGAAGAATTAGAACATTTGACTGAAGAAAAGACCCAAGTCGATCTTGATGAGAAGCATCTGGCAGAAGCTCTTGGACCTTTATCCAAGAAGAAAGACAAATTACTTGCTGACCATAATGAACTGAAAATTAGACTTAACCGTGAGTATGAGGATCTGGTTGAACAAAAGAGAAGTTATCAGCAAGAAGCCGAAGCACTTTTTAAAATGACTATTAAGATTAAAGAGTACTCTGATCTTAAGAAAGGAGACAGGTTGAAGGAACTGCAGGAGAAGAAATCTCTATCAGAATCTCAACTTCAAAGTTGTGAAACCAGGAAGGAGGAAGGTTTAGCTGAACTAAACAAAAATAAAGATTTGATGCGAAATAAAGATCAAGTAAGAAGAAATATTGAGGACAACTTAAATTACAGGAAAACAAAGGCTGAAGTAGATAAGCTAGCACGTGAAATTGATACACTTGAAGAAAATATATTGAAGGTTGGTGGGGTTTCAACATATGAAACTGAACTCAAAAAACTGACCCAGGAGAAGGAGAGGCTTCTTTCGGAGTTAAACAGGTGCCATGGAACGATGTCTGTTTATGGGAGCAATATTTCAAAAAATAAGATTGATCTTAAGCAGTCACAATACAAGGACATAGATAAACGATACTTTGACCAGCTTATCCAGCTTAAGACAACTGAAATGGCAAACAAGGACCTGGACAGATACTACAATGCACTTGATAAAGCACTGATGCGCTTCCACTCAATGAAAATGGAAGAAATCAACAAAATTATAAGGGAATTGTGGCAACAAACTTATAGAGGACAGGATATAGACTGCATTAGTATTCATTCAGATTCCGAAGGTGCTGGGACTCGATCCTACAGTTACAAGGTTCTCATGCAGACTGGTGATGCAGAGTTAGAAATGAGAGGAAGATGTAGTGCGGGTCAGAAGGTACTGGCATCTCTTATCATACGGTTGGCTTTAGCTGAAACGTTTTGCCTCAATTGTGGAATACTTGCGTTGGATGAACCAACCACAAATTTGGATGGACCAAATGCTGAAAGTCTGGCTGCTGCTCTCCTAAGAATCATGGAGGACAGGAAAGGCCAGGAAAATTTTCAACTAATTGTAATTACTCATGATGAGCGTTTTGCCCAACTGATTGGTCAGCGTCAGCACGCAGAGAGATATTATCGAGTCACAAAAGATGACCATCAGCACAGTATAATCGAATCTCAGGAGATATTTGACTGA 3951 0.3989 MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNARSGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKASKMEYKAIESVLQTINPHSGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRESIAQDQEKTESLKGQIQQLDGSIEDLDTKIHHTEKTLKDLLELQKQITTKTAQRSTLFNEQQKKYAALAEEIEDTDEELMEWKTKFEENIAILQTNISKLEREMDDTDKKSSILKKTIEDSIWVISKLQTEAEAHMSLKNERDSSIQNLFAKYNLGSLPKSPFSDEVALNLTNRVKSRLGDLVKDLEDKKKANDNELNVAWKSYMEANDYWKSTEATKEAKTVIKSDLIKRIEEKKNERDSFELQISNVDFSRIDERERNLQIELERKTKQLAEREFEPNIRQMQSELYSVDQKIKAVNREKDIMASDSEDRVKLSVKKAELKNQKEKHKKIIDGQKDKIRRVLKGRVPPDKDVKKEITQALRAVGAEFDDMNAKYREAEKEVNMLQMKIQEVNNKLSKSHKDLESRKRFIESKLQSLDPQCSGIDSYLKVLETSKEKRDVQKSKYNIADGMRQMFDPFERVARAHHICPCCERPFSAEEEDDFVKKQRVKAASSAEHMKVLGVESSNADSHYQQLDKLRLFYEEYLKLSKETIPNTEKELQQLEEELDHKSQALDDVLGVLAQVKTDKDSVEELVQPVENADRLFHEIQAMQKQVEELEYKLDFQGPGVRTLEEIQLELNALQGTKDNLHTELEKLREEQRHLENDRINIQIRWHTAREEKLKATKTLEAFKRLEEELEHLTEEKTQVDLDEKHLAEALGPLSKKKDKLLADHNELKIRLNREYEDLVEQKRSYQQEAEALFKMTIKIKEYSDLKKGDRLKELQEKKSLSESQLQSCETRKEEGLAELNKNKDLMRNKDQVRRNIEDNLNYRKTKAEVDKLAREIDTLEENILKVGGVSTYETELKKLTQEKERLLSELNRCHGTMSVYGSNISKNKIDLKQSQYKDIDKRYFDQLIQLKTTEMANKDLDRYYNALDKALMRFHSMKMEEINKIIRELWQQTYRGQDIDCISIHSDSEGAGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALLRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAERYYRVTKDDHQHSIIESQEIFD. 1317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01385 1316 Coils Coil 884 918 - -
Seca6g01385 1316 Coils Coil 1038 1058 - -
Seca6g01385 1316 Coils Coil 937 971 - -
Seca6g01385 1316 Coils Coil 987 1007 - -
Seca6g01385 1316 NCBIfam rad50 3 1310 IPR004584 GO:0000723|GO:0005634|GO:0006281|GO:0016887|GO:0030870
Seca6g01385 1316 ProSiteProfiles Rad50 zinc-hook domain profile. 648 747 IPR013134 -
Seca6g01385 1316 Coils Coil 538 565 - -
Seca6g01385 1316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 1286 IPR027417 -
Seca6g01385 1316 Coils Coil 753 787 - -
Seca6g01385 1316 PANTHER RAD50 1 1314 - -
Seca6g01385 1316 Coils Coil 197 217 - -
Seca6g01385 1316 Coils Coil 451 471 - -
Seca6g01385 1316 Coils Coil 507 527 - -
Seca6g01385 1316 FunFam DNA repair protein RAD50 3 300 - -
Seca6g01385 1316 Coils Coil 839 880 - -
Seca6g01385 1316 Coils Coil 1065 1092 - -
Seca6g01385 1316 Coils Coil 588 640 - -
Seca6g01385 1316 Coils Coil 808 828 - -
Seca6g01385 1316 FunFam Os02g0497500 protein 1118 1315 - -
Seca6g01385 1316 Gene3D - 4 286 IPR027417 -
Seca6g01385 1316 Pfam AAA domain 7 245 IPR038729 GO:0006302|GO:0016887
Seca6g01385 1316 Coils Coil 249 269 - -
Seca6g01385 1316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 299 IPR027417 -
Seca6g01385 1316 Coils Coil 284 343 - -
Seca6g01385 1316 Gene3D - 996 1315 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01385 Seca-Chr6 61811661 61829516 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01385 K10866 - jre:109008437 2156.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01385 6 61811661 61829516 Seca6g01385 6 61811661 61829516 ECH