Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01384 ATGGATCCAGTGAACGTGTGGGGTAACACACCATTGGTAACAGTGGACCCAGAAATCCACGACCTAATCGAGAAGGAGAAGCGTCGTCAATGCCGCGGCATCGAGCTTATAGCGTCGGAGAATTTCACCTCCTTCGCAGTCATCGAAGCTCTCGGCAGCGCCCTCACCAACAAATACTCCGAGGGCATGCCCGGTAACCGCTACTACGGTGGCAACGAATTCATCGACCAGATCGAAAACCTTTGTCGTTCACGTGCTCTTGAAGCCTTTCACGTGGACCCCACCAAATGGGGTGTTAACGTTCAACCTTACTCCGGTTCTCCGGCCAACTTCGCCGCCTACACGGCGGTGCTTCAGCCACATGACCGTATCATGGGTTTGGATCTTCCCTCAGGTGGACACCTCACACATGGGTACTATACCTCTGGTGGGAAGAAGATCTCTGCTACTTCCATTTACTTTGAGAGTTTGCCTTATAAGGTGAATTCAAGCACTGGGTATATTGACTATGATAAGTTGGAGGAGAAAGCTTTGGATTTTAGGCCAAAGTTGATTATTTGTGGTGGTAGTGCTTACCCAAGGGATTGGGATTATGCTAGGTTCAGACAGGTTGCTGATAAGTGTGGTGCTCTCTTGCTCTGTGACATGGCTCACATTAGTGGCCTTGTTGCTGCTCAGGAAGCTAATAATCCCTTTGAGTATTGTGACATTGTCACAACAACAACCCACAAGAGCTTGAGAGGTCCCAGGGCTGGTATGATCTTCTACAGGAAGGGACCAAAACCACCAAAGAAGGGCCAGCCTGAGAATGCAGTTTATGATTTTGAAGACAAAATCAACTTTGCAGTCTTCCCATCCCTTCAGGGTGGTCCTCATAATCACCAGATTGGTGCCCTTGCTGTTGCTCTGAAACAGGCCATGACGCCTGGGTTCAAGGCATATGCCAAGCAAGTTAAGGCCAATGCAGTTGCACTTGGAAATTACTTGATGAGCAAGGGATATAGTCTTGTCACTGGAGGAACTGAGAACCATCTTGTCTTGTGGGATCTTCGCCCTCTTGGCTTGACTGGCAACAAGGTGGAGAAACTTTGTGACCTCTGTAACATTACTGTGAACAAAAATGCTGTTTTTGGTGATAGCAGTGCCTTGGCTCCCGGAGGAGTACGAATTGGTGCCCCAGCTATGACTTCTAGGGGCTTGGTTGAGAAGGACTTTGAACAGATAGGAGAGTTCCTTCACCGTGCAGTGACTCTCACACTGGAGATCCAGAAGGAGCATGGCAAACTGTTGAAGGATTTCAACAAGGGCTTGGTGAACAACAAGGCTATTGAAGAACTCAAAGCTGATGTTGAGAAGTTCTCAGCCTCATTCGATATGCCTGGCTTCCAAGTATCTGAGTTGAAGTACAAGGATTAG 1416 0.4831 MDPVNVWGNTPLVTVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDQIENLCRSRALEAFHVDPTKWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRQVADKCGALLLCDMAHISGLVAAQEANNPFEYCDIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAMTPGFKAYAKQVKANAVALGNYLMSKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEQIGEFLHRAVTLTLEIQKEHGKLLKDFNKGLVNNKAIEELKADVEKFSASFDMPGFQVSELKYKD. 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01384 471 FunFam Serine hydroxymethyltransferase 305 460 - -
Seca6g01384 471 Gene3D Aspartate Aminotransferase, domain 1 16 460 IPR015422 GO:0003824
Seca6g01384 471 Pfam Serine hydroxymethyltransferase 13 411 IPR039429 -
Seca6g01384 471 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 10 464 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Seca6g01384 471 SUPERFAMILY PLP-dependent transferases 6 462 IPR015424 -
Seca6g01384 471 PIRSF SHMT 1 466 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Seca6g01384 471 FunFam Serine hydroxymethyltransferase 41 316 - -
Seca6g01384 471 CDD SHMT 15 453 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Seca6g01384 471 Gene3D - 41 316 IPR015421 GO:0003824
Seca6g01384 471 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 236 252 IPR019798 GO:0030170
Seca6g01384 471 Hamap Serine hydroxymethyltransferase [glyA]. 11 461 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01384 Seca-Chr6 61808550 61811379 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01384 K00600 - gmx:100815417 910.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01384 6 61808550 61811379 Seca6g01384 6 61808550 61811379 ECH