Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01383 ATGGCTTTGCTGGTAGAGAAAACCAATGCTGGGAGAGAATACAAGGTGAAGGACATGTCCCAAGCCGATTTCGGAAGGCTTGAAATCGAGCTTGCCGAAGTTGAAATGCCAGGTCTCATGTCATGCCTTTCCGAATTCGGACCCTCTCAACCCTTCAAAGGCGCCAGAATCACCGGTTCCCTTCACATGACCATCCAAACCGCCGTCCTCATCGAAACCCTAACCGCTCTCGGCGCCGAGGTCCGTTGGTGTTCCTGCAACATTTTCTCCACTCAGGACCACGCCGCCGCCGCCATCGCTCGTGACAGCGCCGCCGTATTCGCCTGGAAGGGTGAGACTCTCCAGGAGTACTGGTGGTGCACCGAGCGCGCCCTCGATTGGGGTCCATCTGGTGGACCCGATCTCATTGTTGATGATGGTGGTGACACCACGTTGCTCATCCATGAAGGTGTTAAGGCTGAAGAGGCTTATGAGAAGACAGGGCAGTTACCTGACCCTGCTTCTTCTGATAATGCCGAGTTTCAGATCGTGCTTACTATTATTAGGGATGGGTTGAAGACTGATCCTAAGAGGTACCACAAGATGAAGGAGAGACTTGTTGGTGTCTCTGAAGAGACCACCACTGGTGTTAAGAGGCTTTACCAGATGCAGGCTAATGGTTCCCTCTTGTTCCCTGCTATCAATGTCAATGACTCTGTCACCAAGAGCAAGGTACATTTTCTCATTTTTTTACCTTTTTTTGATAACTTGTATGGGTGCCGTCACTCACTCCCTGATGGTCTGATGAGGGCAACAGATGTTATGATTGCCGGTAAGGTTGCTGTTGTCTGTGGGTATGGAGATGTTGGCAAGGGTTGTGCTGCTGCCTTGAAGCAGGCTGGTGCTCGTGTGATTGTGACTGAGATTGATCCCATTTGTGCCCTTCAAGCTCTCATGGAAGGTCTTCAAGTTCTGACCCTTGAAGATGTTCTCTCTGAGGCTGACATCTTTGTTACCACCACTGGTAACAAGGACATTATCATGGTTAGCCACATGAAGAAAATGAAGAACAATGCCATTGTGTGCAACATTGGTCACTTTGACAATGAAATTGACATGCTTGGCCTTGAGACATACCCTGGTGTGAAGCGCATCAATATTAAGCCTCAAACTGACAGATGGGTTTTCCCTGACACCAACACTGGCATCATTGTCTTGGCTGAGGGTCGATTGATGAACTTGGGGTGTGCAACAGGGCACCCCAGTTTTGTGATGTCATGCTCCTTCACCAACCAGGTCATTGCTCAGCTTGAGTTGTGGAAGGAGAAGGGTTCCGGCAAGTATGAGAAGAAGGTGTACGTTTTGCCTAAGCACCTTGATGAGAAAGTGGCTGCTCTTCATCTTGGCAAGCTTGGAGCTAAGCTCACTAAGCTTAGCAAAGACCAGGCAGATTATATCAGTGTGCCTGTTGAGGGTCCATACAAGCCTGCTCACTACAGGTACTGA 1485 0.4949 MALLVEKTNAGREYKVKDMSQADFGRLEIELAEVEMPGLMSCLSEFGPSQPFKGARITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCTERALDWGPSGGPDLIVDDGGDTTLLIHEGVKAEEAYEKTGQLPDPASSDNAEFQIVLTIIRDGLKTDPKRYHKMKERLVGVSEETTTGVKRLYQMQANGSLLFPAINVNDSVTKSKVHFLIFLPFFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKQAGARVIVTEIDPICALQALMEGLQVLTLEDVLSEADIFVTTTGNKDIIMVSHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRINIKPQTDRWVFPDTNTGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKGSGKYEKKVYVLPKHLDEKVAALHLGKLGAKLTKLSKDQADYISVPVEGPYKPAHYRY. 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01383 494 PANTHER ADENOSYLHOMOCYSTEINASE 6 494 IPR000043 -
Seca6g01383 494 Gene3D - 15 494 IPR042172 -
Seca6g01383 494 ProSitePatterns S-adenosyl-L-homocysteine hydrolase signature 1. 85 99 IPR020082 -
Seca6g01383 494 Hamap S-inosyl-L-homocysteine hydrolase [ahcY]. 9 486 IPR000043 -
Seca6g01383 494 Pfam S-adenosyl-L-homocysteine hydrolase 13 493 IPR000043 -
Seca6g01383 494 SMART AdoHcyase_2 13 493 IPR000043 -
Seca6g01383 494 Gene3D - 252 413 - -
Seca6g01383 494 FunFam Adenosylhomocysteinase 251 412 - -
Seca6g01383 494 NCBIfam adenosylhomocysteinase 14 486 IPR000043 -
Seca6g01383 494 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 249 412 IPR036291 -
Seca6g01383 494 CDD SAHH 23 482 IPR000043 -
Seca6g01383 494 ProSitePatterns S-adenosyl-L-homocysteine hydrolase signature 2. 271 288 IPR020082 -
Seca6g01383 494 SMART AdoHcyase_NAD_2 249 412 IPR015878 -
Seca6g01383 494 Pfam S-adenosyl-L-homocysteine hydrolase, NAD binding domain 249 412 IPR015878 -
Seca6g01383 494 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 370 494 - -
Seca6g01383 494 PIRSF SAHH 2 494 IPR000043 -
Seca6g01383 494 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 13 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01383 Seca-Chr6 61785463 61787858 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01383 K01251 - cpap:110807929 923.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01383 6 61785463 61787858 Seca6g01383 6 61785463 61787858 ECH