Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00837 ATGGCGGCAGCTGCAGCACCAGCATCATCATCCTGTCATCTACTCCTCGTTCTTCGTTCACAATCGCCGTCACCGTCACCGTCACCGTCACTGTCACCGTCTTCTTCTTTTTTTTCCTTTCTCAAACCTCTCTTTGTTCCTTCTTCCAATGCTCTATCATTGCGCCTTCGACAAACCCATGTTCCACCGCTTCGAAAAACCCTCTTTCCCTCTCTCTTCTCCACCTCCTCCTCTTCTTCTTCCCTCGCTTTTCCTCACACACCTCCCCTTGCCGCCTCCGTTGTTGGGGGTTCAGCGCAAAAATCCATAGAAGATGATACGGAATATGAAGCAGTGGAACAATATGATGAGGAAGCAGAGGTTTTAGACGATGAATTGGAAACTGAAAGAGGCGATTTTGAAGATACCCAAGAAGTGGATTCAACTTCGTCGCCGTTGGAGAGAAAGAGGGAGGAGAGGTTAAAGTTGGAGCTTCCGAGTCTAACTGTGAAAGAAAAGAAAGAGCTTGCTTCTTATGCACATAGTTTGGGGAAAAAGCTCAAGACCCAGTTGGTGGGGAAGTCTGGTGTCACATCCAATGTTGCTACATCTTTTATTGAGACCCTTGAAGCCAACGAGCTTCTCAAGATTAAAATACACCGGAGCTGTCCAGGTGAGTTAGATGATGTGGTGAAGCAACTGGAAGAACTAACTGGTTCAGTGGCTGTTGGTAAGATTGGTCGAACACTGATTATATACAGGCCTAGTCTCTCCAAATTGAAGGCAGAAGAAAAGAAGAAACAAGTTCGTCAACTTTTTCTGAAAAGACAACAGAAATCAAGACTGTTTAGCAAGAGTAAGCAACAAGGACCCAAATTATCAGGGCGAGGTTCATCATGGAAAGTGAGAGACAGTAGGTCATAA 903 0.4551 MAAAAAPASSSCHLLLVLRSQSPSPSPSPSLSPSSSFFSFLKPLFVPSSNALSLRLRQTHVPPLRKTLFPSLFSTSSSSSSLAFPHTPPLAASVVGGSAQKSIEDDTEYEAVEQYDEEAEVLDDELETERGDFEDTQEVDSTSSPLERKREERLKLELPSLTVKEKKELASYAHSLGKKLKTQLVGKSGVTSNVATSFIETLEANELLKIKIHRSCPGELDDVVKQLEELTGSVAVGKIGRTLIIYRPSLSKLKAEEKKKQVRQLFLKRQQKSRLFSKSKQQGPKLSGRGSSWKVRDSRS. 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00837 300 FunFam RNA-binding CRS1 / YhbY (CRM) domain protein 160 259 - -
Seca6g00837 300 PANTHER CRS1/YHBY DOMAIN CONTAINING PROTEIN, EXPRESSED 5 294 - -
Seca6g00837 300 Gene3D - 160 261 IPR035920 -
Seca6g00837 300 MobiDBLite consensus disorder prediction 122 148 - -
Seca6g00837 300 SUPERFAMILY YhbY-like 160 249 IPR035920 -
Seca6g00837 300 MobiDBLite consensus disorder prediction 273 300 - -
Seca6g00837 300 SMART CRS1_YhbY_2 161 247 IPR001890 GO:0003723
Seca6g00837 300 Pfam CRS1 / YhbY (CRM) domain 161 247 IPR001890 GO:0003723
Seca6g00837 300 Coils Coil 112 132 - -
Seca6g00837 300 MobiDBLite consensus disorder prediction 273 288 - -
Seca6g00837 300 ProSiteProfiles CRM domain profile. 159 258 IPR001890 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00837 Seca-Chr6 28557210 28558676 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00837 K07574 - gmx:100779359 271.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g00837 6 28557210 28558676 Seca6g00837 6 28557210 28558676 ECH