Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00828 ATGGGGAGTTTGGGAGCGATTCTGAAACATCCAGATGACTTCTACCCGTTGCTGAAGCTCAAAATGGCGGCAAGGCACGCCGAGAAGCAGATCCCTTCCGAACCGCATTGGGGCTTCTGCTACACAATGCTCCACAAGGTTTCTCGAAGTTTCGCTCTCGTCATTCAGCAGCTTGGTCCTGAGCTTCGCAACGCTGTTTGCATATTCTATTTGGTTCTTCGAGCTCTCGATACCGTTGAGGATGATACTAGCATAGCTACAGATGTCAAGGTGCCAATACTAATAGCTTTTCATCGTCACATCTATGATCGTGATTGGCACTTTTCATGTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAACGGCCTTTCTGGAACTTGGAAAGAACTATCAGGAAGCAATTGAGGACATTACCAAAAGAATGGGCGCTGGAATGGCCAAATTTATTTGCAAGGAGGTAGAAACAGTTGATGACTACGATGAATATTGTCACTATGTGGCAGGACTTGTGGGGCTAGGTTTATCAAAGCTTTTCCATGCTTCTGGTTCAGAAGATCTGGCTTCGGATTATCTTTCCAATTCAATGGGTTTGTTTCTTCAGAAAACAAACATTATTCGAGATTATCTAGAAGACATCAATGAGATCCCTAAGTCACGCATGTTTTGGCCACGGCAGATCTGGAATAAATATGTTAACAAACTTGAGGACTTGAAATATGAAGAGAACTCTGTTAAGGCAGTGCAATGCTTAAACGACATGGTCACTAATGCTCTGATGCATGTTGAAGATTGCTTAAAATACATGGCTGCTTTACGAGACCTGGCTATATTTCGTTTTTGTGCTATTCCCCAGATAATGGCAATTGGAACACTTGCATTATGCTACAACAACATTGAGGTCTTCAGAGGTGTAGTTAAAATGAGGCGAGGTCTAACTGCCAAAGTGATTGATCGAACAAAGACTATGGCTGATGTCTATGGTGCTTTCTTTGATTTTGCTGCTATGTTGGAGTCCAAGGTTGACAAAAATGATCCCAATGCAACAAAAACATTGAGCAGACTGGAGGCTATACAGAAAACTTGCAGAGAATCTGGTCTCCTAACTAAAAGGAAATCTTACATTCTGAGAAAGGAGAACGGATATGGCTCAACCATGATTCTCATACTGGTCATCTTGTTTGCCATCATCTTTGCTTATCTCTCTGCTAACAACCATAATAACTAG 1242 0.4203 MGSLGAILKHPDDFYPLLKLKMAARHAEKQIPSEPHWGFCYTMLHKVSRSFALVIQQLGPELRNAVCIFYLVLRALDTVEDDTSIATDVKVPILIAFHRHIYDRDWHFSCGTKEYKVLMDQFHHVSTAFLELGKNYQEAIEDITKRMGAGMAKFICKEVETVDDYDEYCHYVAGLVGLGLSKLFHASGSEDLASDYLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPRQIWNKYVNKLEDLKYEENSVKAVQCLNDMVTNALMHVEDCLKYMAALRDLAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTKTMADVYGAFFDFAAMLESKVDKNDPNATKTLSRLEAIQKTCRESGLLTKRKSYILRKENGYGSTMILILVILFAIIFAYLSANNHNN. 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00828 413 NCBIfam squalene synthase 36 367 IPR006449 GO:0004310|GO:0008610
Seca6g00828 413 CDD Trans_IPPS_HH 38 320 IPR033904 GO:0004311
Seca6g00828 413 FunFam Squalene synthase 1 34 370 - -
Seca6g00828 413 Gene3D Farnesyl Diphosphate Synthase 34 371 IPR008949 -
Seca6g00828 413 SUPERFAMILY Terpenoid synthases 37 367 IPR008949 -
Seca6g00828 413 Pfam Squalene/phytoene synthase 45 315 IPR002060 GO:0009058
Seca6g00828 413 SFLD Isoprenoid Synthase Type I 37 325 - -
Seca6g00828 413 SFLD Squalene/Phytoene Synthase Like 37 325 IPR002060 GO:0009058
Seca6g00828 413 ProSitePatterns Squalene and phytoene synthases signature 1. 168 183 IPR019845 GO:0016765
Seca6g00828 413 PANTHER FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE 1 404 IPR044844 GO:0004311
Seca6g00828 413 ProSitePatterns Squalene and phytoene synthases signature 2. 201 229 IPR019845 GO:0016765
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00828 Seca-Chr6 28306074 28312512 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00828 K00801 - gmx:547940 779.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g00828 6 28306074 28312512 Seca6g00828 6 28306074 28312512 ECH