Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00823 ATGATGTTGCAAAGCATTGGATCTAATAGAATTTCGCACTTGCATTGCGGAAATCAACAAAGAAAAATTGCTGTTCTAAAACAATTTGGGGCTGGCGGGTATGGAGGTTCAGATAATATGGTTACCGATGAGAGAGAGCTCCAACTACACCAGAAACTTGAGAAGCTTTTTATATCAACACGTGCGGGGAAGCGTTATCAAAGGGATATTGTCCGTGGTGTAGAAGGTTATATTGTTACTGGGTCCAAGCAAGTTGAAATAGGAACAAAGTTGTCAGAAGATAGCAGGAAATATGGTGCGGAAAATACATGTACCAGTGGTGGTACATTGTCTAGAGCTGCACTAAGTTATGCACGAGCCCGCGCCCAAATGGAAAAGGAGCGTGGAAACTTACTAAAAGCCCTTGGTACACAGGTGCTATATATTCAGGTTGCAGAGCCCTTAAGGGCAATGGTGGTGGGAGCTCCATTGGAGGATGCTCGGCATCTTGCTCAACGTTATGATAGAATGCGGCAGGAAGCTGAAGCCCAGGCTATTGAAGTTTCTAAACGTCAGGCAAAAGTAAGAGAAATGCCAGGCAATGCTGAGAATGCTATGAAATTAGAAGCAGCTGAAGCAAAGCTGCAAGACCTGAAGGCAAACATGGGCATATTGGGGAAGGAAGCAGCTGCAGCATTGGCTGCTGTTGAAGCACAGCAACAGAGGTTAACCCTTCAACGGCTTATAGCTATGGTTGAAGCAGAGCGTGCCTATCATCAAATAGTCTTACAAATTCTTGATCAGCTTGAGGGAGAGGTAAGCATTATGATATCAGAACGACAACGAATTGAAGCCCCTCCTACTCCTAGTGTGGATAACAGCATGCCGCCACCCCCATCATATGAAGAAGTGAATGATGTCTATGCTTCTCAGACACATAATGGATCAACAGATAGCATGGGTTACTTCTTAGGAGAGGTTTTATTTCCATACTCTGCTGTGTCTGAAGTGGAGCTGAATCTATCAGTTGGTGATTATGTTGTTGTTCGAAAGGTGACAAACAACGGATGGGCCGAGGGTGAATGCAAAGGCAAAGCAGGTTGGTTTCCGTTTAGTTATATTGAAAGAAGGGAACGGGTTCTTGCGAGCAAGGTGGCTGAAGTGTTTTAA 1149 0.4456 MMLQSIGSNRISHLHCGNQQRKIAVLKQFGAGGYGGSDNMVTDERELQLHQKLEKLFISTRAGKRYQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGAENTCTSGGTLSRAALSYARARAQMEKERGNLLKALGTQVLYIQVAEPLRAMVVGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQAKVREMPGNAENAMKLEAAEAKLQDLKANMGILGKEAAAALAAVEAQQQRLTLQRLIAMVEAERAYHQIVLQILDQLEGEVSIMISERQRIEAPPTPSVDNSMPPPPSYEEVNDVYASQTHNGSTDSMGYFLGEVLFPYSAVSEVELNLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFSYIERRERVLASKVAEVF. 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00823 382 Coils Coil 157 184 - -
Seca6g00823 382 Gene3D Arfaptin homology (AH) domain/BAR domain 48 278 IPR027267 -
Seca6g00823 382 Coils Coil 228 248 - -
Seca6g00823 382 PANTHER SH3 DOMAIN-CONTAINING 25 370 - -
Seca6g00823 382 Coils Coil 194 221 - -
Seca6g00823 382 SUPERFAMILY SH3-domain 278 370 IPR036028 GO:0005515
Seca6g00823 382 Gene3D SH3 Domains 303 380 - -
Seca6g00823 382 Pfam Variant SH3 domain 320 368 IPR001452 GO:0005515
Seca6g00823 382 SUPERFAMILY BAR/IMD domain-like 48 271 IPR027267 -
Seca6g00823 382 SMART SH3_2 316 371 IPR001452 GO:0005515
Seca6g00823 382 ProSiteProfiles Src homology 3 (SH3) domain profile. 313 372 IPR001452 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00823 Seca-Chr6 28271165 28277030 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00823 - - gmx:100783004 613.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g00823 6 28271165 28277030 Seca6g00823 6 28271165 28277030 ECH