Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00787 ATGTCACCGTCGTCAACCGGAAACTGCAGCAAAATCCGTCGCATTGTTCGTCTCCGGCAAATGCTTCTCCGGTGGCGAACGAAAGCGCGGTTAGCGTCGTCCGATGTTCCGGCAGGACACGTGGCGGTGTGTGTGGGTCCCAGCAGGAGGAGGTTCATCGTGCGCGCTAGTTACCTGAACCACCCGATCTTCAAGAAGCTTCTGGTGATGGCGGAGGAAGAGTACGGCTTCTGCAACCATGGCCCGCTCGCTATCCCTTGCGATGAGTCTCTTTTTGAAGAGCTTCTTCGGGTCATGGCCCGGCTCGAAGATTTCCAGAGACGCTGCCACGTGGATATGCGAAGTGAATCATGGCCCTTGCTTCATGACGATCCAATCTGCTGA 384 0.5625 MSPSSTGNCSKIRRIVRLRQMLLRWRTKARLASSDVPAGHVAVCVGPSRRRFIVRASYLNHPIFKKLLVMAEEEYGFCNHGPLAIPCDESLFEELLRVMARLEDFQRRCHVDMRSESWPLLHDDPIC. 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00787 127 Pfam Auxin responsive protein 18 98 IPR003676 GO:0009733
Seca6g00787 127 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 28 95 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00787 Seca-Chr6 26764330 26765113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00787 7 121 Calmodulin-binding Proteins AT4G34750 50.714 8.65e-41 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00787 K14488 - gmx:100795345 196.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g00787 6 26764330 26765113 Seca6g00787 6 26764330 26765113 ECH