Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00771 ATGGAAGTTAACCTCTGTTTGAACCACCACCACCACCGCGCTCTCAGATTAACCCCTTCCCTTTCTCTCTCCACTCCCCGCACACAGTTCCTCGGTTGCGCCCACAGTCTCAGGCCACCACCACCACTACCTCCTGGACTTCGCTCTCGAAACAAACGCAACAACAAGTTAGGGCTTCTTCGCCTCCATTCCCCGCGCTTCGTCTTCAAGGCCTCCTTCCATTCTCACCCTGTCATCGTCGTCGTCATCGTAGTTACTTTATCTGCTGTTTCTCTGCTCCACTTCACTCTCAACAAGAAAAAGAAGACTCTCGACCAGACACGAGGACATGCAAAATTTGCACTATCACCACAAGGAAGTAATGTTGGGAACCAAGTCATTGATAGCCAGATTATTGGTTTTCCTGAATTTCAAAGGGATAATCCCCTGAACGAAATCAATGGAGAAGACAACCATGTTTTTGAGGAAAAAGAGGTCCACCTTCCAGTTTTGCAATCTTCTATGGTGCATGAAACAGCCTTCACGACTGAGACATCAGAGTCATCTTCGTCCAATCTTGACTCCAGTGTCATTGATAGCCAGATTCTTGGTTTTCAAGAATTTCAAAGGGATGACCAAGTGAATGATATTGGGAATTTAAAGGATCCCAATGGAGAAGACAACCATGTTTCTGAGGACATAGAGGTCCACCTTCCATTTTTGCAATCTTCTATGGTGCATGAAGCAGCCTTCACGACTGAGACATCAGATTCTTGGTCCAATCTTGACTCCAGTGTCATTGATAGCCAGATTCTTGGTTTTCAGGAATTTCAAAGGGGTGACCAAGTGAATGATATTGGGAAATTAAAGGATCACAATGGAGAAGATAACCATGTTTCAGAGGACAAAGAGGTCCGCTTTCCATTTTTGCAATCTTCTATGGTGCATGAAGCAGCCTTCGCGACTGAGACATCAGAGTCATCTTCGTCCAACCTTGACTCCAGTGTCATTGATAGCCAGATTCTTAGTTTTCCAGAATTTCAAAGGGATAACCAAGTGAATGATATTGGGAAATTAAAGGATCGCAATGGAGAAGACAACCATGCTTTAGAGGACAAAGAGGTCCGCCTTCCATTTTTGGAATCTCCTATGGTGCATGAAGCAGCCTTCACCACTGAGACATCAGAGTCATCTTCATCCAGTCTTGACTCTAGTGTCAATAATAATAGTTCCAAGGTATTAGATGAGTCTTTTTTATCTGTGGCTTTCCAATCAAGTTCTTTACAACCTCTAGCTTTTGCTGAGGATATGGCTTTACAAGTGGAAGAAAATCAAGATCAAGTTGATTCTGATCCCAAGTTGCCTTTGAATACAGACAAATCTAAGCATACTGCTTCTTCTGTTTGTGTAAACAATGCACTCGCAACAATTAATGAACATACTAAAGAAAAAATTGAACTTGGTGCCATTAGCAGTGAGGTCCTTTTTGGTGAATCAGTTAGGGAAGGTCTTTACATGTTTTATGAGGATAACAAGTCTGCAACCGGATCCATGACACCACTGAGTAGTTTAAAGTCATTATCTCCCCATGCTTCTTTTATGAGTGGAAAAGGATTGCCATCAGCAGTGGGAAACACCATGATAAAAGGATCAGGATTATCTACAGAATTTTCTCTAAAAAGTGCAGAGTATGTTGAAGGAGCAGTTAAAATTTCCAGTCATAAAGAGGGGTACCCTCCACAACATGTAGGTAAAAACTTGAGGAAAGGCAGCAGATCTCCGAGAAACAGGGAAAGGAACAGTATGGATCATAATAGTAGCAAAGTTTTGCCCCATAATGCCCACTCAATCAGGGTGAATGGTGATCAGGAAAATGATCAAATCAGGGTCCATGATGGTCAGAAAATTGATCCTTCAGAGCATCTAAGCAAATATAATAACTTGTTAAAAGCTGGGAGGTTACATGAATGTGTAAATTTGCTCAAAGACGTGGAAACAAAGGGTTTATTAGATATGACTAAGGTTTATCATGCCAAGTTTTTCAACATCTGCAAGAAACAAAAAGCTGTTAAAGAAGCTTTTGATTACATTAATCTTATTCCAAATCCAACGCTGAGTACATTTAATATGCTTATGTCTGTGTGTACAAGTTCCCAAGATTCAGAAGGGGCTTTCCAAGTTATGCAGCTTCTTAAGAATGCTGGACTAGAACCTGATTGCAAACTTTATACCACTCTGATATCAACTTGTGCCAAGAGTGGGAAAGTTGATCGAATGTTCGAAGTGTTTCATAAGATGGTTAATTCTGGAGTAGAACCTAATGTTCTTACCTATGGGGCACTTATTGATGGTTGTGCTAGAGCTGGGCAAGTTGCTAAAGCATTTGGTGCTTATGGGATACTGAGGTCAAAGAACGTGAAGCCAGATCGTGTTGTATTCAATGCACTTATAGCTGCATGTGCGCAATCGGGAGCAGTGGATCGTGCTTTTGATGTGGTAGCAGAAATGGCAGCTGAAACACAGCCCATTGACCCAGATCACATAACTGTTGGTGCATTGATGAAGGCATGTGCAAATGCTAGTCAGGTTGAACGAGCACGAGAAGTGTATAAGATGATACAACAATATAGCATAAAGGGATCTCCAGAAGTGTATACTATTGCCATTAATTCTTGCAGCCAAACTGGAGATTGGGAATTTGCATGTAGGGTATACAATGACATGACCCAGAAAGGGGTGCTCCCTGATGAGATGTTTCTGAGTGCACTAATAGATGTTGCTGGACATGCTAAAATGCTGGATGCTGCCTTTGATATACTACAGGAAGCCCGTAAAGGAGGAATGCGTATTGGAATAATGACATATAGCTCATTGATGGGTGCCTGCAGCAAGGCAACAAATTGGCAGAAAGCGTTGGAACTATACGGATATCTGAAATCTATCAAGTTGGTGCAAACAGTTTCAACAGTTAATGCTTTACTCACTGCACTTTGTGATGGGGATCAATTTCAGAAGGCTTTGGAGATTTTATCTGAAATGAAAGGATTAGGATTGTGCCCGAACAGTATCACATTCTCAATACTTATAGTGGCAAGTGAGAAAAAGGATGATATAGAAGCAGCTCAAATGCTCCTTTCTCAAGCCAAAAACGATGGTGTAGCTCCTAATCTCATCATGTGTCGGTGCATAATTGGAATGTGCCTGCGGAGATTTGAGAGGGCTTGCTTTGTTGGTGAACCTGTTTTATCTTTTGCCTCAGGACGGCCACAAGTTAATAACAAATGGACATCACTGGCTTTAATGGTGTATCGTGAAACAATTGGAGCTGGTGAAAAGCCTACAAGTGAAATATTGTCACAAATTCTGGGATGCATGCAACTACCTTATGATACATCTGTGAAAAATAGACTTGTTGAGAACCTGGGAGTAAGTGCTGAATCTTCAAGGAGCTCAAACCTCTTTTCATTAGTGGATGGATTTGGTGAATATGATCCTCGTGCTTTTTCAATACTTGAGGAAGCTGCTTCACATGGAGTTGTTCCATCTGTATCATTTAAAGTGAGTCCTATTGTTATCGATGCTAAAGAGTTCCATGCTTTTACTGCTGAGGTATACTTCTTAACCGTCTTAAAAGGTCTCAAGCATCGCCTAGCAGCAGGTGCAAGATTATCCAATATAATCATTTTATTGCCTGTAGAAAAAACAAAAGTTTCATCTCCCAAGGGGGAAAAGTTTGTTAACCTTGCAGGAAGAGTTGGCCAAGTAGTTGCAGCGTTGTTGAGGAGGCTTCAGATTCCGTACCAGGGTAATGAGTCGTATGGGAAGCTTAGAATTAATGGTCTGGCTCTAACTAAATGGTTTCAGCCAAAACTTGCATCTCCATTCAGTGGAAAACCAGGTGACTGGAGCTCATCCCAATCTCGACTGGGCAAAAGCATTAGCCATCAGCAGCGAAACATTCGAACTGGAAATCTATCTTTGGACTAA 3966 0.4168 MEVNLCLNHHHHRALRLTPSLSLSTPRTQFLGCAHSLRPPPPLPPGLRSRNKRNNKLGLLRLHSPRFVFKASFHSHPVIVVVIVVTLSAVSLLHFTLNKKKKTLDQTRGHAKFALSPQGSNVGNQVIDSQIIGFPEFQRDNPLNEINGEDNHVFEEKEVHLPVLQSSMVHETAFTTETSESSSSNLDSSVIDSQILGFQEFQRDDQVNDIGNLKDPNGEDNHVSEDIEVHLPFLQSSMVHEAAFTTETSDSWSNLDSSVIDSQILGFQEFQRGDQVNDIGKLKDHNGEDNHVSEDKEVRFPFLQSSMVHEAAFATETSESSSSNLDSSVIDSQILSFPEFQRDNQVNDIGKLKDRNGEDNHALEDKEVRLPFLESPMVHEAAFTTETSESSSSSLDSSVNNNSSKVLDESFLSVAFQSSSLQPLAFAEDMALQVEENQDQVDSDPKLPLNTDKSKHTASSVCVNNALATINEHTKEKIELGAISSEVLFGESVREGLYMFYEDNKSATGSMTPLSSLKSLSPHASFMSGKGLPSAVGNTMIKGSGLSTEFSLKSAEYVEGAVKISSHKEGYPPQHVGKNLRKGSRSPRNRERNSMDHNSSKVLPHNAHSIRVNGDQENDQIRVHDGQKIDPSEHLSKYNNLLKAGRLHECVNLLKDVETKGLLDMTKVYHAKFFNICKKQKAVKEAFDYINLIPNPTLSTFNMLMSVCTSSQDSEGAFQVMQLLKNAGLEPDCKLYTTLISTCAKSGKVDRMFEVFHKMVNSGVEPNVLTYGALIDGCARAGQVAKAFGAYGILRSKNVKPDRVVFNALIAACAQSGAVDRAFDVVAEMAAETQPIDPDHITVGALMKACANASQVERAREVYKMIQQYSIKGSPEVYTIAINSCSQTGDWEFACRVYNDMTQKGVLPDEMFLSALIDVAGHAKMLDAAFDILQEARKGGMRIGIMTYSSLMGACSKATNWQKALELYGYLKSIKLVQTVSTVNALLTALCDGDQFQKALEILSEMKGLGLCPNSITFSILIVASEKKDDIEAAQMLLSQAKNDGVAPNLIMCRCIIGMCLRRFERACFVGEPVLSFASGRPQVNNKWTSLALMVYRETIGAGEKPTSEILSQILGCMQLPYDTSVKNRLVENLGVSAESSRSSNLFSLVDGFGEYDPRAFSILEEAASHGVVPSVSFKVSPIVIDAKEFHAFTAEVYFLTVLKGLKHRLAAGARLSNIIILLPVEKTKVSSPKGEKFVNLAGRVGQVVAALLRRLQIPYQGNESYGKLRINGLALTKWFQPKLASPFSGKPGDWSSSQSRLGKSISHQQRNIRTGNLSLD. 1322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00771 1321 Gene3D Tetratricopeptide repeat domain 845 957 IPR011990 GO:0005515
Seca6g00771 1321 Gene3D Tetratricopeptide repeat domain 958 1070 IPR011990 GO:0005515
Seca6g00771 1321 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 802 836 IPR002885 -
Seca6g00771 1321 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 697 731 IPR002885 -
Seca6g00771 1321 MobiDBLite consensus disorder prediction 584 598 - -
Seca6g00771 1321 MobiDBLite consensus disorder prediction 435 454 - -
Seca6g00771 1321 FunFam Pentatricopeptide repeat-containing protein MRL1 chloroplastic 924 1071 - -
Seca6g00771 1321 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 767 801 IPR002885 -
Seca6g00771 1321 Pfam Pentatricopeptide repeat domain 1002 1060 IPR002885 -
Seca6g00771 1321 Gene3D Tetratricopeptide repeat domain 634 835 IPR011990 GO:0005515
Seca6g00771 1321 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 20 219 - -
Seca6g00771 1321 Pfam Pentacotripeptide-repeat region of PRORP 699 832 IPR033443 -
Seca6g00771 1321 Pfam Pentacotripeptide-repeat region of PRORP 847 989 IPR033443 -
Seca6g00771 1321 Coils Coil 1024 1044 - -
Seca6g00771 1321 MobiDBLite consensus disorder prediction 566 607 - -
Seca6g00771 1321 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 732 766 IPR002885 -
Seca6g00771 1321 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X1 832 923 - -
Seca6g00771 1321 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 979 1013 IPR002885 -
Seca6g00771 1321 NCBIfam pentatricopeptide repeat 700 733 IPR002885 -
Seca6g00771 1321 NCBIfam pentatricopeptide repeat 877 910 IPR002885 -
Seca6g00771 1321 NCBIfam pentatricopeptide repeat 770 802 IPR002885 -
Seca6g00771 1321 NCBIfam pentatricopeptide repeat 982 1014 IPR002885 -
Seca6g00771 1321 NCBIfam pentatricopeptide repeat 735 768 IPR002885 -
Seca6g00771 1321 MobiDBLite consensus disorder prediction 1288 1321 - -
Seca6g00771 1321 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 874 908 IPR002885 -
Seca6g00771 1321 MobiDBLite consensus disorder prediction 1291 1321 - -
Seca6g00771 1321 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic 646 777 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00771 Seca-Chr6 25864486 25882795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00771 630 1049 Glycosyltransferase AT1G05670 27.103 1.40e-36 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00771 - - gsj:114424984 1557.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g00771 6 25864486 25882795 Seca6g00771 6 25864486 25882795 ECH