Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00761 ATGGCGGAAGAATACGATGAGGTTGAGGCTGAGGTTGAAGAAGAGTTCTCCGTTTGGAAGAAGAACACTCCTTTGTTGTACGACCTTTTCATCTCTCACCCTCTTCCATGGCCTTCCCTCACCGTTCACTGGCTTCCCTCTTCTCCTCAACCTCACTCCAACCCTTCCTTCAACCTCCACAGCCTCCTCCTCGCCACTCACACCTCCCAAGGTGAACCCAACTCCCTTATGCTCGCCCATGCCTCCCTCCCCACAAACACATTGCAACCCATCATTCCAGCCGATCCCTTCAATCCCCTTCTTCCCAAGATAGAGGTTACCCAAAAGATTCCCGTTGATGGGGAGGTGAATCGTGCACGTTCTATGCCACAGAACCCTAGTATTGTTGCTGCAAAGACTTGTAATTCTGAGGTTTATGTGTTTGATTTTTCCAAGCAACGAGGGGGTGGTTCTGATCCTGATTTGAGGTTGAGGGGTCATGATAAAGAAGGTTATGGTTTGTCTTGGAGCCCTTTTAAGAACGGGTACCTTTTGAGTGGTTCACATGACCATAAGATTTGCTTGTGGGATGTACCAGCTGAATCAAAAGAGAGTGTGCTTGATGCGGTTCACGTTTATGAGGCCCATGAAAATGTGGTGGAAGATGTATCTTGGCATTTGAAGGATGAGAATTTATTTGGGTCCGTTGGAGATGCCTGCAAGTTGATAATTTGGGACTTGCGGACAAACAAAGCCCAACAATCAGTCAAACCACATGTTGCTGGAATATCATTTGTGACTGACAATGTTATATTGTCTCTGGTTTTCTTTTTGAATCAGGTGAACTTTCTTTCTTTCAGTCCATATAATGAATGGATTTTGGCTACAGCATCCTCAGACACCACTGTTGGTCTTTTTGATACACGGAAGCTTACAGTGCCACTGCATGTTTTAAGTAGCCACACAGATGAAGTATTCCAGGTAGAGTGGGATCCTAACCACGAGACCGTGTTGGCATCTTCTGGTGCTGACAGAAGGCTAATGGTTTGGGACCTTAACAGGATTGGGGATGAGCAGATAGAGGACGATGATGAGGGTGGTCCTCCTGAGCTACTCTTCTCACACGGGGGTCACAAAGGGAAAATATCAGATTTTTCATGGAACCAAAATCTGCCATGGGTCATCTCAAGTGTAGCTGAGGACAACTCTTTCCATGTCTGGCAAATGACTGAGAGCATTTACAATGATGGTGACGACGACGACATGTGGATGGCTAATGAGTAA 1263 0.4624 MAEEYDEVEAEVEEEFSVWKKNTPLLYDLFISHPLPWPSLTVHWLPSSPQPHSNPSFNLHSLLLATHTSQGEPNSLMLAHASLPTNTLQPIIPADPFNPLLPKIEVTQKIPVDGEVNRARSMPQNPSIVAAKTCNSEVYVFDFSKQRGGGSDPDLRLRGHDKEGYGLSWSPFKNGYLLSGSHDHKICLWDVPAESKESVLDAVHVYEAHENVVEDVSWHLKDENLFGSVGDACKLIIWDLRTNKAQQSVKPHVAGISFVTDNVILSLVFFLNQVNFLSFSPYNEWILATASSDTTVGLFDTRKLTVPLHVLSSHTDEVFQVEWDPNHETVLASSGADRRLMVWDLNRIGDEQIEDDDEGGPPELLFSHGGHKGKISDFSWNQNLPWVISSVAEDNSFHVWQMTESIYNDGDDDDMWMANE. 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00761 420 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 311 346 - -
Seca6g00761 420 SUPERFAMILY WD40 repeat-like 108 404 IPR036322 GO:0005515
Seca6g00761 420 PANTHER WD40 REPEAT FAMILY 8 412 - -
Seca6g00761 420 ProSitePatterns Trp-Asp (WD) repeats signature. 177 191 IPR019775 -
Seca6g00761 420 Gene3D - 1 417 IPR015943 GO:0005515
Seca6g00761 420 Pfam WD domain, G-beta repeat 157 190 IPR001680 GO:0005515
Seca6g00761 420 Pfam WD domain, G-beta repeat 273 300 IPR001680 GO:0005515
Seca6g00761 420 Pfam WD domain, G-beta repeat 365 400 IPR001680 GO:0005515
Seca6g00761 420 Pfam WD domain, G-beta repeat 307 344 IPR001680 GO:0005515
Seca6g00761 420 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 14 84 IPR022052 -
Seca6g00761 420 ProSiteProfiles Trp-Asp (WD) repeats profile. 157 199 IPR001680 GO:0005515
Seca6g00761 420 ProSitePatterns Trp-Asp (WD) repeats signature. 331 345 IPR019775 -
Seca6g00761 420 PRINTS G protein beta WD-40 repeat signature 177 191 IPR020472 -
Seca6g00761 420 PRINTS G protein beta WD-40 repeat signature 331 345 IPR020472 -
Seca6g00761 420 PRINTS G protein beta WD-40 repeat signature 287 301 IPR020472 -
Seca6g00761 420 ProSiteProfiles Trp-Asp (WD) repeats profile. 311 346 IPR001680 GO:0005515
Seca6g00761 420 SMART WD40_4 103 142 IPR001680 GO:0005515
Seca6g00761 420 SMART WD40_4 260 300 IPR001680 GO:0005515
Seca6g00761 420 SMART WD40_4 150 190 IPR001680 GO:0005515
Seca6g00761 420 SMART WD40_4 304 344 IPR001680 GO:0005515
Seca6g00761 420 SMART WD40_4 199 239 IPR001680 GO:0005515
Seca6g00761 420 SMART WD40_4 361 401 IPR001680 GO:0005515
Seca6g00761 420 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 157 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00761 Seca-Chr6 25369474 25372265 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00761 177 402 Miscellaneous Gene Families AT5G08390 21.239 2.83e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00761 K10752 - gmx:100791834 693.345