Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00752 ATGAGTGCCTCCAGGTTCATCAAGTGTGTCACTGTTGGTGATGGTGCCGTCGGCAAAACCTGTATGCTTATCTCTTACACCAGCAACACTTTCCCTACGGACTATGTGCCTACTGTCTTTGACAATTTCAGTGCAAATGTAGTTGTGGATGGGAGCACTGTGAATCTTGGGTTGTGGGATACTGCTGGCCAAGAAGATTACAATAGATTAAGACCCTTAAGCTATCGTGGAGCAGATGTCTTCCTGCTAGCTTTCTCTCTCATAAGCAGGGCCAGCTATGAAAATGTTGCCAAGAAATGGATTCCTGAGTTGAAGCATTATGCTCCTGGTGTTCCAATTATTCTTGTTGGAACGAAACTTGATCTTCGGGATGATAAGCAGTTCTTGCAAGACCATCCTGGTGCAGTGCCAATCACCACAGCACAGCTTTATTTGTTCATAATTAGGGCATCAGCTTACTTGATAGGTTATTGGTCTGATTTACTGTCTTTCCTGAAGGGTGAGGAACTGAGGAAACTCATCGGTGCACCAGTTTACATTGAATGTAGTTCAAAAACACAAAAGAATGTCAAGGCTGTTTTTGATGCAGCCATCAAAGTAGTTCTCCAGCCCCCAAAGCAGAAGAAAAATAAGAGAAAGGGACAAAAGGCCTGTTCCATTTTGTGA 666 0.4354 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISRASYENVAKKWIPELKHYAPGVPIILVGTKLDLRDDKQFLQDHPGAVPITTAQLYLFIIRASAYLIGYWSDLLSFLKGEELRKLIGAPVYIECSSKTQKNVKAVFDAAIKVVLQPPKQKKNKRKGQKACSIL. 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00752 221 CDD Rop_like 6 202 - -
Seca6g00752 221 Gene3D - 1 221 IPR027417 -
Seca6g00752 221 ProSiteProfiles small GTPase Rho family profile. 1 201 - -
Seca6g00752 221 SMART rho_sub_3 9 204 IPR001806 GO:0003924|GO:0005525
Seca6g00752 221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 202 IPR027417 -
Seca6g00752 221 PANTHER RHO FAMILY GTPASE 4 219 IPR003578 GO:0005525|GO:0007264
Seca6g00752 221 SMART ran_sub_2 12 214 - -
Seca6g00752 221 NCBIfam small GTP-binding protein domain 7 129 IPR005225 GO:0005525
Seca6g00752 221 ProSiteProfiles small GTPase Rab1 family profile. 2 221 - -
Seca6g00752 221 PRINTS Transforming protein P21 ras signature 47 69 - -
Seca6g00752 221 PRINTS Transforming protein P21 ras signature 7 28 - -
Seca6g00752 221 PRINTS Transforming protein P21 ras signature 30 46 - -
Seca6g00752 221 PRINTS Transforming protein P21 ras signature 109 122 - -
Seca6g00752 221 PRINTS Transforming protein P21 ras signature 179 201 - -
Seca6g00752 221 SMART rab_sub_5 7 204 - -
Seca6g00752 221 FunFam Rho family GTPase 2 215 - -
Seca6g00752 221 ProSiteProfiles small GTPase Ras family profile. 2 221 IPR001806 GO:0003924|GO:0005525
Seca6g00752 221 SMART ras_sub_4 4 204 - -
Seca6g00752 221 Pfam Ras family 8 202 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00752 Seca-Chr6 25098159 25101000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00752 7 204 EF-hand Containing Proteins AT3G63150 28.141 5.38e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00752 K04392 - cave:132189277 369.007