Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00750 ATGGAAACTCGGAGCCGGAAGCGGGCGGAGGCTTCCTCAGCTGCCCCTTCATCTTCTTCCTCTGGTCCAACCACCCGTTCCAGCAAGCGCGCTCGTCTCTCTTCTTCATCTTCTTCTTCAGCCACCGCCACACCCACCGCCACAACCGCTCCTATTCGTTCTGTCAACACTCGTTCCCGCAGGACTAAAGAACCCTTGCCGCCTAAAAATCCTCCTCCTCCCTCCATGGACCCCACCAACGAATCCTCTGGTTCGCGCCGTGATCGCCGCGGCGGCGGCAGGAATTCCGACTCCGACAAGGGGAAGGAGAAGGAACACGATGTCAGGATTAGGGATAGGGATGCGCAAAGGGGGCTGGCGTTGAACGTGGAAAGTGGCGGTGACGATGATAATGATAGTGATGGTGGCGTGGGGATTTTGCATCAGAATTTGACGTCTGCAAGTAGTGCACTTCAAGGGATTCTTCGGAAACTCGGTGCCGGTTTGGAAGATCTGCTTCCGTCTTCTGCGATGGGTTCTGGGTCGTCGTCTCATCAGAGTGGGAGGTTGAAGAAGATCCTGTTTGGGCTTCGGGCTGATGGGGAAGAAGGTCGGCAGGTTGAGGCTTTGACACAGCTTTGTGATATGCTTTCGATTGGGACCGAGGAATCGCTTAGTACATTCTCGGTTGATTCGTTTGTTCCGGTGCTTGTGGGGTTGCTGAATCACGAGAGCAATCCTGATATCATGCTTCTCGCAGCCAGGGCGCTGACCCATCTCTGCGATGTGCTCCCTTCTTCTTGTGCTGCTGTTGTGCATTATGGCGCGGTGTCAATATTCTGCGCGAGGTTACTCACCATAGAGTATATGGACTTGGCCGAGCAGTCCCTTCAAGCACTGAAGAAGATATCTCAGGAGCACCCAACTGCCTGTCTACGAGCTGGTGCTCTCATGGCTGTGCTTTCTTATTTGGACTTCTTCTCAACAGGAGTTCAGCGGGTTGCGTTATCTACTGCTGCAAATATGTGCAAGAAGCTTCCTTCAGATGCAGCTGACTTTGTGATGGAAGCTGTTCCTCTTCTGACAAACCTCCTTCAGTACCATGATTCCAAGGTCCTGGAGCATGCCTCTGTTTGTTTGACTCGAATAGCTGAAGCATTTACATCATCTCCGGACAGATTAGATGAATTGTGTAATCATGGACTGTTAGCACAAGCTTCCTCGCTCATTTCTAACAGCAGTTCTGGAGGTGGACAAGCTTCTCTGAGCACACCAACATATACTGGTTTAATCCGAATTCTTTCAACTTGTGCGAGTGGGTCCCCTCTTGGAGCTAAAACTTTACTTCATCTCGGAGTTAGTGGTATTCTTAAAGATATTCTATCTGGTTCTGGAGTCTCTTCTAATGCCTCTGTTTCTCCCGCATTAAGTAGGCCACCAGAGCAGATATATGAGATTGTAAACTTGGCAAATGAGCTTCTGCCCCCATTGCCAGAAGGAACAATTTCCCTCCCTGTCAGCTCCAACTTGTTTATAAAAGGGCCTGTTATAAAAAAGGCTCCTGCTGGTACTTCTGGGAAACAAGAAGACACCAATGGAAATACTCCTGAGATATCGGCTCGTGAGAAAATATTAAATGATCAGCCTGAGCTGCTCAAGCAATTTGGGATGGATCTACTCCCAGTTCTAATACAGATATATGGTTCTAGTGTCAATGGTCCTGTTCGGCACAAATGTCTTTCTGTCATTGGAAAATTGATGTATTTCAGCACAGCAGAGATGATCCAGTCTTTGTTGAGTGTAACAAATATATCAAGTTTCTTAGCTGGCGTCTTGGCATGGAAAGATCCATATGTTCTGATTCCTGCCTTGCAAATTGCTGAAATTCTTATGGAAAAGCTCCCTGGGGTTTTCTCGAAGATGTTTATCAGAGAAGGTGTCGTCCATGCTGTCGACCAACTTATTTTAGCTGGAAATTCAACCAATGTCTCTATACAAGCTTCTTCAGCTGAGAAGGATAATGATTCTATATCTGGAGCATCATCTCGCTCTAGACGTTATCGTCGACGCAGTGGTAACTCCAATCCCGATGGAAATCCTTTGGATGATTTGAAGAGTCCAGTTTCAGTAAATGTTGGTTCACCCCCAAGTTCTGTGGATATTCCAACAGTGAACTCTGGTATCAGGTTATCTGTTAGCACAGCTGCTAAAACTTTCAAAGATAAGTACTTTCCTTCAGATCCTGGGGCTGTTGAAGTGGGTGTTACTGATGATCTTTTGCATCTGAAAAATCTTTGCATGAAGTTAAATGCTTGTGTTGATGATTTAAGGACCAATGGTAAAGGGAAATCTAAAACTTCTGGATTAGGTCAAGAAGAGTATTTGATAGGGGTCATATCTGATATGCTAAAGGAACTAGGCAAAGGAGATGGTGTATCTACTTTCGAATTTATTGGTAGTGGTGTTGTTGCAGCTTTGCTGAATTATTTTTCTTGTGGGTATTTCTCTAAAGATCGACCCTCAGAAACCCATCTGCCCAAGCTTCGCCAACAAGCACTTACAAGGTTTAAGTCTTTTATAGCTGTTGCTCTACCTGCCACTATTGATGATGGGGCTGCGGCTCCTATGACTGTCTTGGTCCAAAAGCTTCAAAATGCTTTGTCCTCCTTGGAGCGTTTCCCTGTTGTGCTGAGTCATTCATCAAGGTCATCTGGTGGAAGTGCGCGCCTCTCCTCTGGACTAAGTGCATTATCTCAGCCCTTCAAGTTGCGTCTTTGTCGAGCTCAGGGTGAAAAGTCACTTAGAGATTATTCATCTAATGTTGTATTGATTGATCCATTAGCAAGTTTAGCAGCCATTGAGGAATTTCTTTGGCCTCGTATCCAGCGAAGTGAATCTGTTCAGAAGTCCACTGCACCTGCTGGGAATTCTGAATCCGGGACAACTCCTGCAGGAGCTGGTGTTTCATCTCCTTCTACTTCTACTCCTTCCACTACCCGTCGTCATTCTACAAGATCTAGATCATCTGTTAATATAGGGGATATGCCCAGAAAAGAAGTGACTCAAGATAAAAGCTTGAGCTCATCTAAGGGTAAAGGAAAAGCTGTATTAAAGTCGGCACAAGATGAGGCAAGAGGACCTCAAACCAGGAATGCTGCACGCAGAAGAGCAGCTCTTGATAAAGATGCTGAAATGAAGCCTTCAAATGGTGACTCTACTTCTGAGGATGAAGATCTTGATATATCTCCTGTTGAGATTGATGAGGCATTAGTGATTGAAGATGATGATATTTCCGATGATGAAGATGATGACCATGAAGATGTGCTGAGGGATGATTCTCTTCCTGTTTGCTTACCTGACAAAGTACATGATGTGAAATTGGGTGACTCAGCTGAGGAGGGTACTGTTGCACCTGCAACAAATGGCCAGACTACAGCAGCCTCAGGTTCTAGTAGCAAAGTTGGTGCAGGAAGGGGATCAGACTCTGCTGATTTTAGGAGTGGCTATTCTTCTGGCTCAAGGGGTGCAATGTCATTTGCTGCTGCCGCGATGGCTGGACTTGGATCTGCTAATAGCAGAGGTATTAGGGGTGGTAGAGATCGGCAAGGGCGTCCATTGTTTGGTAGTTCTAATGAACCTCCGAAGTTGATTTTTACTGCTGGTGGGAAGCAGCTTAATAGGCAGTTGACTATATATCAGGCAATTCAAAGACAGCTTGTACTAGATGAAGATGATGATGAGAGATTTGCTGGCAGTGACTATGTATCCAGTGATGGAAGCAGGCTGTGGGGTGATATTTACACTATAACTTATCAGAGGGCAGAGAGCCAAACAGACAGGGCTTCACCTGGAGGTACAAGTTCAAACACTTCAAAATCTGGCAAATCTGGGTCTGTATCAAATTGCAATTCTGAAGCCAAGCTGCATCAGGCATCTGTGTTAGATAGTATCTTGCAGGGAGAATTGCCCTGTGAGCTGGAGAAATCTAATCCTACATACAATATATTAGCTCTATTGCGTGTGCTAGATGGTTTGAACCAGCTTGCACCCCGTTTGAGGGCCCAAGTAGTTACTGATAGGTTTGCTGAGGGAAAAATTTTGGATTTAGATGAGCTAGGTGTTACCACTGGTGCTAGGGTTCCTCTGGAGGAATTTATAAGCAGCAAGCTTACTCCAAAATTAGCTAGGCAAATACAAGATGCCCTTGCCCTGTGCAGTGGAAGTCTTCCCTCATGGTGTTACCAATTAACTAAAGCATGCCCCTTTTTGTTTCCTTTTGAAACCCGGCGACAGTACTTCTATTCAACTGCCTTTGGGTTATCCCGTGCACTGTATCGACTTCAGCAGCAGCAGGGTGCTGATGGTCATGGATCAACAAATGAAAGGGAGGTTAGGGTTGGGAGGTTGCAGCGCCAAAAGGTTCGTGTTTCTCGAAACCGCATTCTGGATTCTGCTGCTAAAGTGATGGAGATGTATTCTAGCCAAAAGGCTGTACTTGAAGTAGAATATTTTGGTGAAGTTGGCACTGGCCTGGGTCCCACCCTTGAGTTTTATACACTTCTAAGTCATGACTTACAAAAAGTTGTCCTTCAAATGTGGAGATCAGATTCTTCTAAGAAATATCAAATGGAAATTGATGGAGATGAAAAGAAAATGAAAAGCAGTGAAGGCTCTTTTGCTGGAGATGAAGAACTTGTTCAAGCTCCTCTAGGGTTGTTTCCTCGGCCTTGGCCTGCAAATGCTGATGCTTCAGAGGGTAGCCAGTTTTTTAAAGTGATCGAATATTTCCGGCTTTTAGGCCGTGTAATGGCTAAAGCACTTCAAGATGGACGCCTATTGGATTTACCAATGTCAGTAGCATTTTATAAGATTGTTCTTGGTCAAGATCTTGATTTACATGACATTCTTGTCATTGATTCTGAACTCGGGAAAATTTTGCAAGAGTTGAATGCTCTTGTTTGTAAGAAACATTATATAGAATCTATTGGTGGTGATCATACTGATACAATTGCTAATTTGCATTTCCGTGGAGCCCCAATTGAAGATCTCTGTTTGGATTTTACCCTTCCTGGCTATCCTGAGTACATTTTGAAACCAGGAGATGAAATTGTTGACATCAATAATCTAGAGGATTACATATCCATGGCAGTTGATGCCACTGTGAAGACTGGAATAATGCGTCAAATGGAAGCATTTAGAGCAGGGTTCAATCAGGTTTTTGACATCTCATCTTTACAAATTTTTACTCCCCAAGAACTGGACTATTTGCTTTGTGGCCGCAAAGAAATGTGGAAGACTGAGACACTAGCTGATCATATAAAATTTGACCATGGGTATACTGCCAAGAGCCCTGCCATAGTTAATTTACTTGAAATAATGGGAGAGTTCACACCGGAGCAGCAGCGTGCCTTCTGTCAATTTGTTACTGGTGCACCTAGGCTGCCACCTGGTGGACTGGCTGTTCTAAATCCAAAACTAACGATTGTGAGGAAGCTTTCGTCAACTGCAGCTAATGCTTCATCTAATGGGAACGGGCCTTCAGAAACAGCAGATGATGATTTGCCAAGTGTGATGACGTGTGCTAATTACCTGAAGCTTCCCCCTTATTCTACCAAGGAAATTATGTACAAGAAGCTACTCTATGCAATCAATGAAGGCCAGGGATCCTTTGATTTATCATGA 5661 0.4487 METRSRKRAEASSAAPSSSSSGPTTRSSKRARLSSSSSSSATATPTATTAPIRSVNTRSRRTKEPLPPKNPPPPSMDPTNESSGSRRDRRGGGRNSDSDKGKEKEHDVRIRDRDAQRGLALNVESGGDDDNDSDGGVGILHQNLTSASSALQGILRKLGAGLEDLLPSSAMGSGSSSHQSGRLKKILFGLRADGEEGRQVEALTQLCDMLSIGTEESLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDSKVLEHASVCLTRIAEAFTSSPDRLDELCNHGLLAQASSLISNSSSGGGQASLSTPTYTGLIRILSTCASGSPLGAKTLLHLGVSGILKDILSGSGVSSNASVSPALSRPPEQIYEIVNLANELLPPLPEGTISLPVSSNLFIKGPVIKKAPAGTSGKQEDTNGNTPEISAREKILNDQPELLKQFGMDLLPVLIQIYGSSVNGPVRHKCLSVIGKLMYFSTAEMIQSLLSVTNISSFLAGVLAWKDPYVLIPALQIAEILMEKLPGVFSKMFIREGVVHAVDQLILAGNSTNVSIQASSAEKDNDSISGASSRSRRYRRRSGNSNPDGNPLDDLKSPVSVNVGSPPSSVDIPTVNSGIRLSVSTAAKTFKDKYFPSDPGAVEVGVTDDLLHLKNLCMKLNACVDDLRTNGKGKSKTSGLGQEEYLIGVISDMLKELGKGDGVSTFEFIGSGVVAALLNYFSCGYFSKDRPSETHLPKLRQQALTRFKSFIAVALPATIDDGAAAPMTVLVQKLQNALSSLERFPVVLSHSSRSSGGSARLSSGLSALSQPFKLRLCRAQGEKSLRDYSSNVVLIDPLASLAAIEEFLWPRIQRSESVQKSTAPAGNSESGTTPAGAGVSSPSTSTPSTTRRHSTRSRSSVNIGDMPRKEVTQDKSLSSSKGKGKAVLKSAQDEARGPQTRNAARRRAALDKDAEMKPSNGDSTSEDEDLDISPVEIDEALVIEDDDISDDEDDDHEDVLRDDSLPVCLPDKVHDVKLGDSAEEGTVAPATNGQTTAASGSSSKVGAGRGSDSADFRSGYSSGSRGAMSFAAAAMAGLGSANSRGIRGGRDRQGRPLFGSSNEPPKLIFTAGGKQLNRQLTIYQAIQRQLVLDEDDDERFAGSDYVSSDGSRLWGDIYTITYQRAESQTDRASPGGTSSNTSKSGKSGSVSNCNSEAKLHQASVLDSILQGELPCELEKSNPTYNILALLRVLDGLNQLAPRLRAQVVTDRFAEGKILDLDELGVTTGARVPLEEFISSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSTNEREVRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVVLQMWRSDSSKKYQMEIDGDEKKMKSSEGSFAGDEELVQAPLGLFPRPWPANADASEGSQFFKVIEYFRLLGRVMAKALQDGRLLDLPMSVAFYKIVLGQDLDLHDILVIDSELGKILQELNALVCKKHYIESIGGDHTDTIANLHFRGAPIEDLCLDFTLPGYPEYILKPGDEIVDINNLEDYISMAVDATVKTGIMRQMEAFRAGFNQVFDISSLQIFTPQELDYLLCGRKEMWKTETLADHIKFDHGYTAKSPAIVNLLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSTAANASSNGNGPSETADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS. 1887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00750 1886 MobiDBLite consensus disorder prediction 1041 1066 - -
Seca6g00750 1886 SUPERFAMILY ARM repeat 183 652 IPR016024 -
Seca6g00750 1886 MobiDBLite consensus disorder prediction 10 56 - -
Seca6g00750 1886 SMART arm_5 297 337 IPR000225 GO:0005515
Seca6g00750 1886 SMART arm_5 214 255 IPR000225 GO:0005515
Seca6g00750 1886 SMART arm_5 340 378 IPR000225 GO:0005515
Seca6g00750 1886 MobiDBLite consensus disorder prediction 1 137 - -
Seca6g00750 1886 MobiDBLite consensus disorder prediction 82 118 - -
Seca6g00750 1886 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 10 1886 IPR045322 GO:0006511|GO:0061630
Seca6g00750 1886 Gene3D Hect, E3 ligase catalytic domains 1405 1648 - -
Seca6g00750 1886 MobiDBLite consensus disorder prediction 1129 1150 - -
Seca6g00750 1886 MobiDBLite consensus disorder prediction 1183 1208 - -
Seca6g00750 1886 FunFam HECT ubiquitin protein ligase family protein KAK 176 490 - -
Seca6g00750 1886 MobiDBLite consensus disorder prediction 959 1106 - -
Seca6g00750 1886 FunFam Putative E3 ubiquitin-protein ligase HECTD1 1755 1885 - -
Seca6g00750 1886 MobiDBLite consensus disorder prediction 1267 1295 - -
Seca6g00750 1886 MobiDBLite consensus disorder prediction 660 674 - -
Seca6g00750 1886 Pfam HECT-domain (ubiquitin-transferase) 1513 1886 IPR000569 GO:0004842
Seca6g00750 1886 FunFam E3 ubiquitin-protein ligase UPL3 1406 1647 - -
Seca6g00750 1886 MobiDBLite consensus disorder prediction 959 1004 - -
Seca6g00750 1886 MobiDBLite consensus disorder prediction 1124 1162 - -
Seca6g00750 1886 SUPERFAMILY Hect, E3 ligase catalytic domain 1457 1879 IPR035983 GO:0004842
Seca6g00750 1886 CDD HECTc 1465 1881 IPR000569 GO:0004842
Seca6g00750 1886 Gene3D - 172 491 IPR011989 -
Seca6g00750 1886 Gene3D Hect, E3 ligase catalytic domain 1757 1884 - -
Seca6g00750 1886 MobiDBLite consensus disorder prediction 660 710 - -
Seca6g00750 1886 SMART hect_3 1476 1886 IPR000569 GO:0004842
Seca6g00750 1886 MobiDBLite consensus disorder prediction 1067 1101 - -
Seca6g00750 1886 ProSiteProfiles HECT domain profile. 1586 1886 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00750 Seca-Chr6 25022279 25033417 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00750 K10590 - gmx:100783336 3044.6