Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00741 ATGGGTTTCTTCAGTACCATTTTGGGGTTTTTCGGATTTGGAGTTGGGATTTCCGTTGGTCTTGTTTCTGGCTATTTTTTCTTCATCTACTTTCAACCCACCGATGTTGAGGATCCTAAAATCAAGCCATTGGTGGAGCAGGACGCGGAGACTTTGCAACGAATGCTTCCTGAGATTCCACTTTGGATTAAAAATCCAGACTTTGATAGGCTTGACTGGCTAAACAAGTTTTTAGAATATATGTGGCCTTATCTTGACAAGGCAATTTGCAAGACTGCAAAGAGCATTGCAAAACCCATAATTGCTGAGCAGATTCCAAAATATAAAATCGATTCTGTTGAGTTTGAAACGCTCACTCTGGGGTCCCTGCCGCCAACTTTTCAAGGAATGAAAGTTTATGTGACTGATGAGAAGGAATTAATTATGGAGCCTTCTGTAAAATGGGCTGGAAATCCTAATATCACTGTTTCTGTCAAGGCATTTGGATTGAAAGCCACCATTCAGGTTGTGGACTTGCAAGTTTTCCTTTTGCCTCGCATTACTTTGAAGCCTTTGGTTCCTAGCTTTCCTTGCTTTGCCAACATCTATGTCTCTCTCATGGAAAAGCCACATGTTGACTTTGGGCTAAAGCTTATGGGGGCTGATCTTATGTCTATTCCTGGCGCCTACAGGATTGTTCAGAAGAATGGAAGAGTTATCATGAAACAGTTTCTTGATCAAGCTGGAGTAGCTGAGCTTATCAAAGATCAGGTTGCAAACATGTATTTATGGCCCAAAACCCTAGAAGTTCAAATACTAGATCTGGCAAAAGCTTTGAAGAGGCCCGTTGGAATTTTACATGTAAAGGTTCTGCATGCAATGAAGTTAAAGAAGAAAGATCTTCTTGGTGCATCTGACCCTTATGTGAAGCTAAAGCTTACTGAGGATAAGTTGCCATCGAAAAAGACTACTGTGAAGCACAAGAACTTAAATCCTGAATGGAATGAAGAATTTAATATGGTAGTCAAAGATCCAGAGTCCCAGGTTTTAGAGATCAATGTTTATGACTGGGAGCAGGTTGGGAATCATGACAAGATGGGTATGAATGTGATCCCTCTAAAAGAAGTTTCCCCTGAAGAGCCTAAACGTTTTACTCTTGACCTCCTAAAAAATATGGATCCCAATGATGCTCAAAATGAGAAGTCACGAGGGCAGATTGTTGTGGAATTGACTTATAAACCCTTCAAGGAGGATGAGATGGCCATGGGTTTTGAAGAGACACAAACAATACCAAAGGCTCCTGAAGGTACTCCTACTGGTGGAGGTCTGCTTGTAGTTATAGTCCATGAAGCTCAAGATGTTGAAGGGAAGTACCACACCAATCCTCATGTGCGTCTTATTTTCAGAGGGGAGGAGAAAAAGACTAAGAACAGGGATCCAAGATGGGAAGATGAGTTCCAATTTATGGTAGAGGAGCCTCCCACCAATGATAAATTACATGTGGAGATTGTCAGCACTTCATCACGAAACCTGCTCCATCCAAAGGAATCATTGGGTTATATCGACATCAATCTTGGGGATGTTGTTGCTAACAAAAGAATCAATGAGAAGTACCATCTTATAGACTCCAAGAATGGTCGCGTCCAGATAGAGTTGCAGTGGAGAACTTCATAA 1653 0.4138 MGFFSTILGFFGFGVGISVGLVSGYFFFIYFQPTDVEDPKIKPLVEQDAETLQRMLPEIPLWIKNPDFDRLDWLNKFLEYMWPYLDKAICKTAKSIAKPIIAEQIPKYKIDSVEFETLTLGSLPPTFQGMKVYVTDEKELIMEPSVKWAGNPNITVSVKAFGLKATIQVVDLQVFLLPRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLMGADLMSIPGAYRIVQKNGRVIMKQFLDQAGVAELIKDQVANMYLWPKTLEVQILDLAKALKRPVGILHVKVLHAMKLKKKDLLGASDPYVKLKLTEDKLPSKKTTVKHKNLNPEWNEEFNMVVKDPESQVLEINVYDWEQVGNHDKMGMNVIPLKEVSPEEPKRFTLDLLKNMDPNDAQNEKSRGQIVVELTYKPFKEDEMAMGFEETQTIPKAPEGTPTGGGLLVVIVHEAQDVEGKYHTNPHVRLIFRGEEKKTKNRDPRWEDEFQFMVEEPPTNDKLHVEIVSTSSRNLLHPKESLGYIDINLGDVVANKRINEKYHLIDSKNGRVQIELQWRTS. 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00741 550 ProSiteProfiles C2 domain profile. 416 531 IPR000008 -
Seca6g00741 550 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 223 IPR039010 -
Seca6g00741 550 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 273 409 IPR035892 -
Seca6g00741 550 SMART C2_3c 278 378 IPR000008 -
Seca6g00741 550 SMART C2_3c 436 530 IPR000008 -
Seca6g00741 550 Gene3D C2 domain 436 549 IPR035892 -
Seca6g00741 550 Pfam C2 domain 436 533 IPR000008 -
Seca6g00741 550 Pfam C2 domain 277 376 IPR000008 -
Seca6g00741 550 FunFam Extended synaptotagmin-2 436 549 - -
Seca6g00741 550 CDD SMP_SYT 60 265 - -
Seca6g00741 550 FunFam Synaptotagmin-2 isoform A 272 427 - -
Seca6g00741 550 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 547 IPR045050 GO:0008289
Seca6g00741 550 ProSiteProfiles C2 domain profile. 257 379 IPR000008 -
Seca6g00741 550 Gene3D C2 domain 273 426 IPR035892 -
Seca6g00741 550 CDD C2 437 534 - -
Seca6g00741 550 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 435 548 IPR035892 -
Seca6g00741 550 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Seca6g00741 550 CDD C2 279 381 - -
Seca6g00741 550 PRINTS C2 domain signature 294 306 IPR000008 -
Seca6g00741 550 PRINTS C2 domain signature 321 334 IPR000008 -
Seca6g00741 550 PRINTS C2 domain signature 343 351 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00741 Seca-Chr6 24763651 24773173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00741 272 529 Lipid Metabolism Gene Families AT3G61300 26.838 5.77e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00741 - - gmx:100781189 993.416