Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00687 ATGGATCCACAGGAGCATTTACATGATCAAGGATCCGAACTATATTCAGGGGATGCTGTTGTTGATAAAAATGATGATGCTGAAACCGGTGGTGCATTGGATTCAGCTTTGGTGGGTGAAAGTACAGATGCGGCGCAGGAGCATGACCACTTTGAGGAGGCAATTGGGGTTTCTACTGAGCCCGGGAAACAGGAGGAGACTGATGTAGTTGCTAACCAGGAGCTGGAAAGGGATGAGCAGGGACATGACAGTGTTCATCTGGATGGAGTTGATTCTGGAGGTACTGGGGATGGTGTATTTTGCGATGATTCCCACAGTAGTAGTGATTGGAGTGATGAAAAGGAAGTATCTGGGTTAGATACCAATGGAAAGATGTCAGTTAAGGAGAATGGAGCTGTGGTGGATGGAAACTCTGGTTTGGTGAGTGAGAAAGCTGAAATTGATGATTCTGAATTCATGACCCCTAGAGAAAATGGTGGTGTAATCTTGGAAAATGGAAGTGCAAGCAAGGTGGACAATGTTGTTTCTGAGTCTAATACTGAATCTGAATCCAATGAGGTGGTTGGAAACCAAGGTAATGCTGCTGGGGATTTGAAGGACAATGGGTCATATCCTGAATCTGGAGATGAGAAAATAGAGGTAAAGCTAAATGCTTCAGGTAACCCTTCTAGTGAAATTCAAGATCCTGCAGGTGAAGAAGTACATGAAAATTCAACTCATATGAATTTAGAACATCAAGCTGAAGTAATAAGGGATGTGAAGGATGATTCTCTTGGCACTGATATAAGCCATGAGGGTAGAAATGGTGAAGAAATGAGCACCTGTGACATTCAGACTACTGAATTCAAAGATTATGAAAATGAGAATGCTCAAGCTGGATCAGATTCAGAGCATCAGGAAGCAACTGGTAAAATGAGAGGAGTTTCTGCCCCTGAACTGCATGAAACTGTGCAGGAAAGGGAAGTAATGCCAGCTGCTGGAAGCTCATCCATTATGGAAAATTCATCTACTGATGAGACACCATCTGTTCAGCCTAGTGCAGCTGATCAAAATGAAGCAAGTAATATGGATTATCAGTCTCAGGTTTCTGATGAACCTAGTGTTCGTGATAACTCTTCTGTAGTTGAGGAGGAAACCACTCAAGTAACTAGAGACCAAAATGTTCAGCCTGCAGCAGAGCGATCTTCTCCATCTGAAAATTCTGGGGGTGCTGAGGATAGAAATGGTGAAGAAAAGAGTGCTCGTGGCATTCAGACTAATCAACTTAGAGATCATGAAAAAGAGGATGCTCAAGCTGAATTAGACTCAGAGCGTCAGGAAGCAACTGTTGAAATTAAAGGAGCTTCTCCCCCTGAACTGCAGGAAACTGTGCAGGAAAGAGATGAAAGCTCATCCTTTTTGGAAAAATCCTCTACTGAGCGATCTTCTCCATCTGATAATTCTGCTGGTTCTGGGCCCCCTCCTGTTCGTCCAGCTGGTCTTGGCCATGCAGCTCCATTGCTGGAACCTGCACCTCGGGTAGTGCAGCCGCCTCGTGTAAATGGTACTGTATCTAGTACACAGTCCCAACAAATGGAGGACTCCTCAAATGGGGAGGCTGAGGAATATGACGAGACACGGGAGAAACTTCAGATGATAAGGGTGAAGTTTTTACGGCTGGCTCATAGGCTTGGGCAAACACCCCATAATGTTGTTGTAGCTCAAGTTTTATATAGACTAGGACTGGCTGAGCAACTCAGAGGAAGGAATGGGGGGCGTGTTGGTGCTTTTAGCTTTGATCGTGCAAGTGCAATGGCTGAGCAGCTCGAAGCATCAGGTCAGGAGCCACTTGATTTCTCTTGTACAATAATGGTTCTTGGAAAGACAGGAGTTGGTAAAAGTGCTACCATCAATTCTATTTTTGATGAGATTAAATTTAATACTAGTGCTTTTCATATGGGAACCAAAAAGGTTCAGGATGTTGTGGGAACTGTGCAGGGCATTAAGGTACGGGTCATTGATACACCAGGACTTCTACCTTCCTGGTCAGACCAGCGAAATAATGAGAAGATCTTGCACTCTGTGAAGAACTTTATTAAGAAAACACCACCCGATATTGTGTTGTATCTTGATAGGTTAGATATGCAGAGCAGAGACTTTAGTGATATGCCACTCTTACGCACCATTACAGAAATTTTTGGGCCATCGATATGGTTCAATGCCATTGTGGTTCTGACTCATGCAGCATCAGCTCCACCTGAGGGCCCCAATGGTACTGCTTCCAGTTATGACATGTTTGTTACTCAGCGTTCTCATGTTGTGCAGCAAGCCATTCGTCAAGCAGCTGGGGACATGCGTCTCATGAATCCTGTATCATTGGTGGAGAACCACTCTGCATGCAGAACAAATAGGGCTGGCCAGAGAGTGTTGCCAAATGGCCAGGTTTGGAAACCTCATTTGTTACTTCTATCTTTTGCCTCAAAAATTCTGGCTGAAGCAAATGCTCTTCTCAAGTTACAAGATAATCCACCTGGGAAGCCTTATACCACACGAGTAAGAGCACCTCCCTTACCTTTTCTTTTGTCAACCCTTCTCCAGTCAAGACCACAACTAAAGTTGCCAGAGGAGCAGTTTGGTGATGAGGACAGTCTTGATGATGATCTTGATGAATCATCAGATTCTGACGATGAAACAGAATTTGATGAGTTGCCACCATTTAAACCTTTAACAAAGGCCCAGGTGGAAAAGCTGTCTAAAGCTCAGAAGAAAGCATATTTTGATGAGTTGGAGTATAGAGAAAAGCTTTTGATGAAGAAACAATTGAAGGAAGAGAAAAAGCGACGTAAGATGATGAAGAAAATGGCAGAATCAACTAAAGATCTGCCAAGTGACTACAGTGAAAATGTAGAAGAAGAAAGTGCTGGTGCAGCTTCTGTTCCTGTTCCCATGCCAGATTTAGCCTTGCCTGCTTCTTTTGATTCTGATAATCCCACTCACAGGTATCGATATCTTGATTCATCAAACCAGTGGCTTGTGAGACCTGTTCTAGAAACTCATGGTTGGGATCACGATGTGGGTTATGAAGGTTTAAATGTGGAAAGATTGTTTGTTGTCCGTGACAAGGTACCTTTATCTTTCACTGGTCAGATTACCAAGGATAAAAAGGATGCTAATGTTCAGATGGAAATAGCCAGTTCAATTAAGCACGGAGAAGGGAAAGCAACCTCATTAGGTTTTGATATGCAGACTGTTGGGAAGGACTTAGCTTATACATTACGCAGTGAGACTAGATTTAGTAATTTTAGAAGAAATAAGGCAACTGCTGGCCTCTCATTTACTCTCCTTGGTGATGCCTTATCAGCTGGAATGAAGATTGAAGACAAATTGGTTGCTAATAAGCGATTCAAGCTGGTTATAAGTGGTGGTGCAATGGCAGGGCGTGGAGATGTTGCTTATGGTGGCAGTTTGGAGGCCCAATTGAGAGATAAGGATTTCCCTCTAGGACGTTTCTTATCGACGCTTGGACTTTCTGTTATGGATTGGCATGGAGAACTTGCTGTTGGGTGCAATGTGCAGTCACAGATCCCAGTTGGACGAAATACGAATCTTGTTGCCCGGGCCAATTTGAACAACCGAGGTGCAGGGCAAATCAGCATCCGATTAAATAGTTCGGAACAGCTTCAAATTGCGTTGGTTGGTCTCATCCCTCTACTAAAGAAGCTAGTTGGTTATCATCAACAATTGCAGTATGGACAATGA 3738 0.4361 MDPQEHLHDQGSELYSGDAVVDKNDDAETGGALDSALVGESTDAAQEHDHFEEAIGVSTEPGKQEETDVVANQELERDEQGHDSVHLDGVDSGGTGDGVFCDDSHSSSDWSDEKEVSGLDTNGKMSVKENGAVVDGNSGLVSEKAEIDDSEFMTPRENGGVILENGSASKVDNVVSESNTESESNEVVGNQGNAAGDLKDNGSYPESGDEKIEVKLNASGNPSSEIQDPAGEEVHENSTHMNLEHQAEVIRDVKDDSLGTDISHEGRNGEEMSTCDIQTTEFKDYENENAQAGSDSEHQEATGKMRGVSAPELHETVQEREVMPAAGSSSIMENSSTDETPSVQPSAADQNEASNMDYQSQVSDEPSVRDNSSVVEEETTQVTRDQNVQPAAERSSPSENSGGAEDRNGEEKSARGIQTNQLRDHEKEDAQAELDSERQEATVEIKGASPPELQETVQERDESSSFLEKSSTERSSPSDNSAGSGPPPVRPAGLGHAAPLLEPAPRVVQPPRVNGTVSSTQSQQMEDSSNGEAEEYDETREKLQMIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGGRVGAFSFDRASAMAEQLEASGQEPLDFSCTIMVLGKTGVGKSATINSIFDEIKFNTSAFHMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRNNEKILHSVKNFIKKTPPDIVLYLDRLDMQSRDFSDMPLLRTITEIFGPSIWFNAIVVLTHAASAPPEGPNGTASSYDMFVTQRSHVVQQAIRQAAGDMRLMNPVSLVENHSACRTNRAGQRVLPNGQVWKPHLLLLSFASKILAEANALLKLQDNPPGKPYTTRVRAPPLPFLLSTLLQSRPQLKLPEEQFGDEDSLDDDLDESSDSDDETEFDELPPFKPLTKAQVEKLSKAQKKAYFDELEYREKLLMKKQLKEEKKRRKMMKKMAESTKDLPSDYSENVEEESAGAASVPVPMPDLALPASFDSDNPTHRYRYLDSSNQWLVRPVLETHGWDHDVGYEGLNVERLFVVRDKVPLSFTGQITKDKKDANVQMEIASSIKHGEGKATSLGFDMQTVGKDLAYTLRSETRFSNFRRNKATAGLSFTLLGDALSAGMKIEDKLVANKRFKLVISGGAMAGRGDVAYGGSLEAQLRDKDFPLGRFLSTLGLSVMDWHGELAVGCNVQSQIPVGRNTNLVARANLNNRGAGQISIRLNSSEQLQIALVGLIPLLKKLVGYHQQLQYGQ. 1246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00687 1245 MobiDBLite consensus disorder prediction 1 239 - -
Seca6g00687 1245 MobiDBLite consensus disorder prediction 272 287 - -
Seca6g00687 1245 MobiDBLite consensus disorder prediction 512 529 - -
Seca6g00687 1245 NCBIfam chloroplast protein import component Toc86/159, G and M domains 490 1238 IPR005690 GO:0003924|GO:0005525|GO:0009707|GO:0045036
Seca6g00687 1245 MobiDBLite consensus disorder prediction 251 271 - -
Seca6g00687 1245 MobiDBLite consensus disorder prediction 328 403 - -
Seca6g00687 1245 MobiDBLite consensus disorder prediction 867 900 - -
Seca6g00687 1245 MobiDBLite consensus disorder prediction 169 191 - -
Seca6g00687 1245 Pfam Translocase of chloroplast 159/132, membrane anchor domain 972 1235 IPR024283 -
Seca6g00687 1245 PANTHER GTPASE, IMAP FAMILY MEMBER-RELATED 613 1158 IPR045058 -
Seca6g00687 1245 ProSiteProfiles AIG1-type G domain profile. 611 840 IPR006703 GO:0005525
Seca6g00687 1245 MobiDBLite consensus disorder prediction 404 442 - -
Seca6g00687 1245 MobiDBLite consensus disorder prediction 469 483 - -
Seca6g00687 1245 MobiDBLite consensus disorder prediction 67 86 - -
Seca6g00687 1245 FunFam Translocase of chloroplast 120, chloroplastic 586 833 - -
Seca6g00687 1245 Pfam AIG1 family 614 747 IPR006703 GO:0005525
Seca6g00687 1245 MobiDBLite consensus disorder prediction 872 893 - -
Seca6g00687 1245 Gene3D - 583 832 IPR027417 -
Seca6g00687 1245 CDD Toc34_like 586 831 - -
Seca6g00687 1245 MobiDBLite consensus disorder prediction 251 538 - -
Seca6g00687 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 606 748 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00687 Seca-Chr6 22997975 23001898 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00687 - - gmx:100810931 1675.22