Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00665 ATGGCGAAGCCTTGTGACTTGCAAATCAACATTAATGATCAGCAGATATTCCTTGTGAAAGAGAAGATTATATTAAAATACTGTGGAAGGGTGAAGAAAATCTTGAATCATCAAAAGAGAAGATGTCATGTGAAGGACATGGGGATTAGAATCAATGATTTTCCTGGAGGCCCAGATGGGTTTGAGCTAGTTTCAAGGTTCTGTTACAACAATGGCAAAATCCCAATCACTGTAGCTAATGTGCCCCTACTCCATTGTTGTGCTGTTTTTCTTGGAATGACTGAGGAGGTCTTCAGCAACAATCTACTGCAACAAACAGAGACTTTTCTTGAGGGAATCTATTACTGGAAATGGAATGACATACTAGTAAGTCTCATGAGCTGCCAGCTGTTTTATGCATATGCAGATTGCTGTGGTCTGTTGGAGAAGATGATTTGTGCACTCTTAGCAAAGATTGCTCAAAATTTAGATGCCAACTTCCTCACTTCCTCCTCTTCACCATCATCATCATCATCTTCACCAGAAAGCAATTTCGCCAAGAGGTTCTCTTCTTCAACCCAGACTACCCCAGAAAAAATCAAGTCAACTTTGCCTAGCAAAGCATGGTGGTTTGATGATCTGGCAACTTTACCACCAAATATAATTGAGAAGCTTTTTCAGAGTATTGGAGCATTCAAAGCTGATAACAACAACTTAGTCCTTACAAGATTTCTGTTGCATTATCTGAAAACAGCTACTCAAACCAAAGTTGTTAATTGCAGAAATAAGAGTGAGTATGCTGCTCTTGCAGAAACAGCTGCTTATGGGGTCATATTTGTTGGTAGGAAGAACTTTACTTGCAGAGGCCTTTTTTGGGTATTAAGGATTGTATCTGGATTTAGGTTGAGTAGAGGTTGCAGAACTGAACTGGAGAAATTGATTGGTGGGATGCTTGAGCAAGCTACGTTGGATGATCTTCTGGTGTCAGGGCATGATATGGGAGTTTATTATGATGTTAATTTGGTGATAAGATTGGCTAAGCTTTTTGTTGATATCAATGGTTGTGATGGACTGTCCCTACAGAAACTGAAAAGGGTTGGTAGATTAATTGACAAGTATTTGAGAGAGATATCCCCTGACCAGAACCTCAAGATCTCTAAATTTCTTGGAGTTGCAGAATGCTTGCCAGATTCTGCAAGGGATTGCTTTGATGGGGTCTACAGAGCCATTGACATCTATCTTGAGTCTCATCCACTTGTCACATTTGAGGAAAGATCGAGATTGTGTAAATGTCTTAATTACAGTAAACTCAGCTTTGAAGCTAGTAAAGATCTGGCCAAGAACCCCAGAATACCTCCAATGATTGCAATGCAGGCTCTACTTTCTCAAAAATCAAAAGTTCCAACAAGCGACTTTGTAACTGAGAGTCCAAGAATGAACACTTCCCAAATGGTTTTGTACAATGAAGCCAACAGAAACAGTTTTTCTCATGAGAAAAAGGGTATGAAACTAAACATAGAGAGAATTCAACGGAAAGTGGTAGAACTGGAGAAATTACACGACGAAATGAACGGTCAGATTTCTAAGTTGTTTAACCATAATGACTTACTTATTCCTGCTCGTGCCAGATCCTCCCCAAGACTTTGTTGA 1629 0.3959 MAKPCDLQININDQQIFLVKEKIILKYCGRVKKILNHQKRRCHVKDMGIRINDFPGGPDGFELVSRFCYNNGKIPITVANVPLLHCCAVFLGMTEEVFSNNLLQQTETFLEGIYYWKWNDILVSLMSCQLFYAYADCCGLLEKMICALLAKIAQNLDANFLTSSSSPSSSSSSPESNFAKRFSSSTQTTPEKIKSTLPSKAWWFDDLATLPPNIIEKLFQSIGAFKADNNNLVLTRFLLHYLKTATQTKVVNCRNKSEYAALAETAAYGVIFVGRKNFTCRGLFWVLRIVSGFRLSRGCRTELEKLIGGMLEQATLDDLLVSGHDMGVYYDVNLVIRLAKLFVDINGCDGLSLQKLKRVGRLIDKYLREISPDQNLKISKFLGVAECLPDSARDCFDGVYRAIDIYLESHPLVTFEERSRLCKCLNYSKLSFEASKDLAKNPRIPPMIAMQALLSQKSKVPTSDFVTESPRMNTSQMVLYNEANRNSFSHEKKGMKLNIERIQRKVVELEKLHDEMNGQISKLFNHNDLLIPARARSSPRLC. 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00665 542 Pfam NPH3 family 202 435 IPR027356 -
Seca6g00665 542 PANTHER OS12G0117600 PROTEIN 4 512 IPR043454 -
Seca6g00665 542 ProSiteProfiles NPH3 domain profile. 201 459 IPR027356 -
Seca6g00665 542 Coils Coil 492 519 - -
Seca6g00665 542 MobiDBLite consensus disorder prediction 165 191 - -
Seca6g00665 542 SUPERFAMILY POZ domain 4 95 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00665 Seca-Chr6 21673558 21677088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00665 6 522 EF-hand Containing Proteins AT3G44820 24.216 1.92e-48 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00665 - - gmx:100808259 868.226