Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca6g00661 | ATGGCAAGCCATCCTGGAAAATTTGCTCCTTCAAATGGGTCTGTTTATGTATGCAACTTGCCTTATGGAACTGACGAAAATATGTTGGCTGAATATTTTGGCACCATCGGATTAATTAAGAAAGATAAACGCACAGGGAGACCAAAAATATGGTTATATCGAGACAAAGAGACTAATGAACCAAAGGGAGATGCTACTGTAACATATGAGGATCCGCATGCTGCTGTAGCTGCTGTTGAATGGTTTAACAACAAAGATTTTCATGGTAATACAATTGGAGTTCATATAGCAGAGTCAAAAAACAAGGATGACCAAGCATATAATTCAGTAGGAGATCCAGGTGTTGCTGATAATGTTGGTGGACTAGAGGAAACTGCAAGGGAGAATGATGTTAGTGGAAGAGGTAGAGGTCAAAATGATACTTCTGGCAAACCATGGCAGCAAGAGGGCGATTGGTTGTGTCCGAATACAAGCAGTTGCTCCAATGTGAATTTTGCTTTTCGTGGTGCGTGTAATCGCTGTGGAACTGCTCGCCCTGCTGGTGCTGCTGGTGTTGCAGGGGGTGGTGGCCGTGGCAAGGGACGGGCTGGACCCGATTCAGCAGGGGGTACTGGCCGTCCAGTCGGTGGAGGTCTCTTTGGTCCCAATGACTGGCCTTGTCCAATGTATGATTGTGTCACATTGTCCTCGTGTGGCAATATCAATTGGGCAAAGCGGACAAAATGCAACATTTGCAATACAAATAAGCCTGGGCATAATGAGGGTGGTGTAAGAGGAGGACGAGCTGGAGGTTACAAAGAGCTTGATGAAGAGGAAATTGAAGAAACTAAACGTCGTAGGCGGGAGGCTGAAGATGATGGGGAGCTGTATGATGAATTTGGAAATCTTAAGAAGAAATTCCGTGCCAAAACACAGCAAGCTGAAGCTGCTCGGGTGCTTCCTGGTTCAGGGCGTGCTGGTTGGGAGGTTGAGGAACTAGGGATCGACAGGGATACTAGGGAAAGAAGTAGAGACAGGGGAAGGGAACGAAATGATGGAGAGAACAGGAACAGAGACCGAAATGAAAAAGACAGGCCAAGTAGTAGGAATAGAGAGAGGGACAGGGGAAGAGATCGGGACTGGGATTACGTTGATCGTGATAGAGATTATGGGCGGGATCGGGACCGGAACAGACACCGTTATTAA | 1185 | 0.4675 | MASHPGKFAPSNGSVYVCNLPYGTDENMLAEYFGTIGLIKKDKRTGRPKIWLYRDKETNEPKGDATVTYEDPHAAVAAVEWFNNKDFHGNTIGVHIAESKNKDDQAYNSVGDPGVADNVGGLEETARENDVSGRGRGQNDTSGKPWQQEGDWLCPNTSSCSNVNFAFRGACNRCGTARPAGAAGVAGGGGRGKGRAGPDSAGGTGRPVGGGLFGPNDWPCPMYDCVTLSSCGNINWAKRTKCNICNTNKPGHNEGGVRGGRAGGYKELDEEEIEETKRRRREAEDDGELYDEFGNLKKKFRAKTQQAEAARVLPGSGRAGWEVEELGIDRDTRERSRDRGRERNDGENRNRDRNEKDRPSSRNRERDRGRDRDWDYVDRDRDYGRDRDRNRHRY. | 395 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca6g00661 | 394 | Coils | Coil | 266 | 286 | - | - | |
| Seca6g00661 | 394 | SUPERFAMILY | RNA-binding domain, RBD | 10 | 102 | IPR035979 | GO:0003676 | |
| Seca6g00661 | 394 | MobiDBLite | consensus disorder prediction | 375 | 394 | - | - | |
| Seca6g00661 | 394 | FunFam | HIV Tat-specific factor 1 | 12 | 96 | - | - | |
| Seca6g00661 | 394 | MobiDBLite | consensus disorder prediction | 253 | 286 | - | - | |
| Seca6g00661 | 394 | PANTHER | ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED | 29 | 109 | - | - | |
| Seca6g00661 | 394 | SUPERFAMILY | Ran binding protein zinc finger-like | 209 | 252 | IPR036443 | - | |
| Seca6g00661 | 394 | MobiDBLite | consensus disorder prediction | 182 | 208 | - | - | |
| Seca6g00661 | 394 | CDD | RRM_SARFH | 15 | 97 | - | - | |
| Seca6g00661 | 394 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 148 | 180 | IPR001876 | - | |
| Seca6g00661 | 394 | SMART | zf_4 | 216 | 248 | IPR001876 | - | |
| Seca6g00661 | 394 | SMART | zf_4 | 150 | 177 | IPR001876 | - | |
| Seca6g00661 | 394 | Gene3D | - | 146 | 182 | - | - | |
| Seca6g00661 | 394 | Gene3D | - | 213 | 252 | - | - | |
| Seca6g00661 | 394 | MobiDBLite | consensus disorder prediction | 135 | 150 | - | - | |
| Seca6g00661 | 394 | Gene3D | - | 12 | 95 | IPR012677 | - | |
| Seca6g00661 | 394 | MobiDBLite | consensus disorder prediction | 126 | 150 | - | - | |
| Seca6g00661 | 394 | FunFam | TATA-binding protein-associated factor 2N isoform X1 | 146 | 181 | - | - | |
| Seca6g00661 | 394 | Pfam | Zn-finger in Ran binding protein and others | 149 | 179 | IPR001876 | - | |
| Seca6g00661 | 394 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 15 | 92 | IPR000504 | GO:0003723 | |
| Seca6g00661 | 394 | MobiDBLite | consensus disorder prediction | 263 | 286 | - | - | |
| Seca6g00661 | 394 | SUPERFAMILY | Ran binding protein zinc finger-like | 142 | 181 | IPR036443 | - | |
| Seca6g00661 | 394 | MobiDBLite | consensus disorder prediction | 323 | 370 | - | - | |
| Seca6g00661 | 394 | SMART | rrm1_1 | 14 | 95 | IPR000504 | GO:0003723 | |
| Seca6g00661 | 394 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 214 | 251 | IPR001876 | - | |
| Seca6g00661 | 394 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 13 | 99 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca6g00661 | Seca-Chr6 | 21302079 | 21308516 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca6g00661 | - | - | gmx:100780819 | 541.191 |