Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00643 ATGATTCTTCAACCTGCTTCTGCCACCTTTCACTTTCACCTCTCTCAGGTTTTCTGCTCCTCCCTCTGTCCCTGCAGCAACAACAACAATGAGCTTATTGCATTCCCCTTCTCCAGAAGGAGGAGGAAGCGCTTGATTGCCAATTCTGGGTATCGCAAATTCCGAAGAAAATGGAGCGTTCGCCTCTGTGCCTTCCCCACAGACAGTTCCAACCGAAATTGGAACGCCGAATTTGCCAATTCAGCAACAAGGGGTGCTAAAAGTTTCGTCTTGAAACGGATGAATTCAAATTCAACTGAACTTGAAGAAGGGGATGATCGTGAGTTGCTAGAGTCACCGGTTCAATTGGGTTCCAACTTCACCGGTTTCCAAGAAGACCCTCTTGTGGATAAGCTGAGAACGCAATTAGGGGTTATACATCCAATTCCATCGCCTCCCATTAACCGTAACGTGGTTGGTTTGTTTGTTTTCTTTTTCTTTGTTGGGGTTGTTTTTGATAAGTTGTGGACTTCAAGGAGGAGGAACAAAGTTAGCAGTGAAGATAGCTTGCGTGGTGTGTGGCCACAGGTACCCACCAGCTTCTCACTGTTTCTGGAAAAGGATTTGCAGAGAAAGGAATCGGTTGAATGGGTGAACATGGTGCTGGGAAAGTTGTGGAAGGTGTATAGAGGTGGGATTGAGAACTGGATTATTGGGTTGCTTCAGCCTGTTATTGATAACTTAAAGAAGCCTGATTATGTGGAGAGGGTTGAGATTAAGCAATTCTCTTTGGGGGATGAACCATTGTCTGTTAGGAATGTTGAGCGCAGGACTTCTCGCCGGGTGAATGATTTACAGTACCAGATAGGCCTTAGGTATACTGGTGGTGCCCGCATGCTGTTAATGCTTTCTCTAAAATTTGGCTTTATTCCAATTGTTGTACCTGTTGGTGTTCGAGATTTTGACATTGATGGTGAACTTTGGGTAAAGTTACGACTAATACCAACAGAACCTTGGGTGGGAGCTGTTCAATGGGCTTTTGTTTCACTTCCAAAGATCAAGTTTGAGTTGTCCCCATTCCGGTTGTTCAATTTAATGGCAATTCCAGTTCTATCAATGTTTTTGACCAAACTTCTCACAGTAGATTTACCTAGACTATTTGTACGACCAAAGAAAATTGTTTTGGATTTCCAGAAGGGAAAAGCTGTTGGTCCTGTTGCTTATAATGTTAAATCTGGAGAAATGCAAGAAGGAAACAAGGATTCTGTTGGTGAACTATCTGTTACTCTTGTGGATGCTCGAAAGCTTCCTTATATTTTCTATGGCAAGACAGATCCTTATGTTATTCTTAGCCTTGGAAATCAAATTATACGCAGTAAAAAGAACAGTCAAACTACTGTCATTGGGCCCCCTGGAATGCCAATTTGGAATCAGGATTTTCATATGCTTGTTTCCAACCCTAAAAAGCAGAAGTTATACATCCAAGTAAAAGATGCGCTGGGATTTGCAGATTTGCCTATTGGTACAGGAGAGGTTGACCTGGGATCTCTTCAAGATACTGTACCAACAGACAGAATTGTGGTTTTACAAGGAGGTTTCGGGTTTTTAGGAAAGGGCTCCTCTGGGGAGATATTACTTCGGCTAACATATAAAGCATATGTGGAGGATGAGGAAGATGACAAGACTGAGGTGGATTCCATTGATATAGATGCTTCAGATGATGAGTTGTCTGATTCAGAAGAAGCAAATGTTACTGATGAGAAATGTGTAAAAGATTCTTTGTATGGAACAGATAAAGAGTCATTTATGGATGTTTTGGCAGCCTTAATTGTTAGCGAAGAATTCCAAGGGATAGTAGCATCTGAAACAGGGTTTACGAAGGGTTTGGATAATGGCTCAAATACAGGGTCTAAAGTATCAAAATCTCCTGTTGCCAATGCTGAATCAATTCCTTCTAGTTCTGATAATTCTGAAGGTTCTGGAGTTGCAGGATCAGCCTTATTTTGGCTTGCTGTGATTACTAGCATATCACTACTAATTGCTGTCAATATCGGGGGTTCGAATCTCTTCAATCCTTAA 2058 0.4193 MILQPASATFHFHLSQVFCSSLCPCSNNNNELIAFPFSRRRRKRLIANSGYRKFRRKWSVRLCAFPTDSSNRNWNAEFANSATRGAKSFVLKRMNSNSTELEEGDDRELLESPVQLGSNFTGFQEDPLVDKLRTQLGVIHPIPSPPINRNVVGLFVFFFFVGVVFDKLWTSRRRNKVSSEDSLRGVWPQVPTSFSLFLEKDLQRKESVEWVNMVLGKLWKVYRGGIENWIIGLLQPVIDNLKKPDYVERVEIKQFSLGDEPLSVRNVERRTSRRVNDLQYQIGLRYTGGARMLLMLSLKFGFIPIVVPVGVRDFDIDGELWVKLRLIPTEPWVGAVQWAFVSLPKIKFELSPFRLFNLMAIPVLSMFLTKLLTVDLPRLFVRPKKIVLDFQKGKAVGPVAYNVKSGEMQEGNKDSVGELSVTLVDARKLPYIFYGKTDPYVILSLGNQIIRSKKNSQTTVIGPPGMPIWNQDFHMLVSNPKKQKLYIQVKDALGFADLPIGTGEVDLGSLQDTVPTDRIVVLQGGFGFLGKGSSGEILLRLTYKAYVEDEEDDKTEVDSIDIDASDDELSDSEEANVTDEKCVKDSLYGTDKESFMDVLAALIVSEEFQGIVASETGFTKGLDNGSNTGSKVSKSPVANAESIPSSSDNSEGSGVAGSALFWLAVITSISLLIAVNIGGSNLFNP. 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00643 685 MobiDBLite consensus disorder prediction 623 652 - -
Seca6g00643 685 MobiDBLite consensus disorder prediction 554 574 - -
Seca6g00643 685 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 417 545 IPR035892 -
Seca6g00643 685 Gene3D C2 domain 399 546 IPR035892 -
Seca6g00643 685 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 36 685 - -
Seca6g00643 685 ProSiteProfiles C2 domain profile. 404 520 IPR000008 -
Seca6g00643 685 MobiDBLite consensus disorder prediction 554 576 - -
Seca6g00643 685 Pfam C2 domain 417 513 IPR000008 -
Seca6g00643 685 SMART C2_3c 418 519 IPR000008 -
Seca6g00643 685 CDD SMP_SF 226 389 - -
Seca6g00643 685 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 204 391 IPR031468 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00643 Seca-Chr6 19479405 19487250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00643 417 554 Acyl Lipid Metabolism Gene Families AT4G13550 30.000 4.13e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00643 - - gmx:100817508 1050.43