Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00641 ATGGCTTCTCCTGCGTGGTTGCCCCAGGAGGCACAACCACCTTTGTCCGGAGAAACACCTCTGCATGCGGCTGCGGTTTCTTCTACCCCAAATTCCTCTGCCACACCGGCACCGGCACCGGCTGCACCATTTGCTTACAGCGTTCATCAAAATGCCAACGCTTCTGGGAATTCTCAGCAGTCGTCGACGCATTCTGTGGTAAAGTCTAATTCGGCAGCAAATCCCATGGCTGTTCAACCTCCAGTTCCTGGTATCTCATCACATGCAGCACCTTCCTTTTCATATAATATTCCTCAAAGTGGAGTGGCTTTTCCTAGCAATCAGCATTCCCAATCTAGCACAAACATGCTGGCTTCTGTTGCACAAGATGTTAGTAAAGCGTCACATCCTGCCCTGGCTCATTCTTCTATATCCACAATGCCGCCACCCTCTGACCCTAACTATCGCCCTGCTACTTCATGGATGCCAACTTTTCCTGTGCATCCTGTAATGCCAGGAACTCCTGTGAATCCTGGACCCCCTGGATTATCACCAGCTGCTCCATCAACAAACACGGAGTCTTCCTCAGCTGCAGTACTGAGACAAAATATGCCAGCCATTGCATCGGATCCTAATGCCCCACAGAAAGGCTTACCCTATCCACCCATACCTTCCATGGTTGCTCCCCCTCAGGGATTTTGGTTACAGCCTCCACAGATGAGTGGTGTACTCAGGCCACCATTTCTTCAATATCCTGCTCCTTTTCCTGGTCCCTATCCATTTCCAGCACGTGGTGTTACTCTCCCTGCAGTTCCAGTACCTGATTCTCAACCTCCTGGTGTCACTCCTTTGGGTGCTGCCAGTGGCACTTCTGCATCTCCTACTTCCAGTCATCAACTGAGGGGAACAACTGGTTTACAGACAGAAGTAATTTCAGGGCATGCTGTTGTAGATGACAAGAAATTAAATGCTGTTGTCACACAGAACGAGGATGCTGGTACTGATCAGTTAGATGCCTGGACTGCCCACAAGACTGAAACAGGAGTTGTATACTATTATAATGCCTTGACAAGAGAATCAACATACAATAAACCTGCTGGCTTTAAAGGGGAGCCTCATCAAGTTTCTGCACAGCCGACTCCAGTGTCAATGGTAGAGTTGCCTGGTACTGATTGGGTGTTGGTCTCTACTAGTGATGGGAAAAAATATTACTACAACAATCAAACCAAGACAAGCTGCTGGCAAATCCCAAATGAGGTGGCTGAATTGAAAAAGAAGCAGGATGGTGATGTTACAAAAGATAATTTAATGTCAGTTCCAAATACTAATGTATTGTCTGATAGAGGGTCTGGAATGGTTACTCTGAATGCTCCTGCTATTAATACTGGTGGTCGTGATGCTGCAGCTCTTAAACCCTCTAATGTACAGAGCTCATCATCTGCTCTGGATTTAATCAAGAAGAAGTTGCAGGACTCAGGAACACCTGTTGCTTCCGCTTCTATTCCTGTGCCATCAGTGCAAACAGGATCTGAATCAAATGGTTCAAAAGCATCTGAACCTACACCTAAGGGGCCACAAAACGATAATAACAAAGATAAACAAAAAGATGTTAATGGTGATGCTAATGTCTCTGATACATCCTCAGATTCAGAAGATGAAGATAGTGGACCTTCAAAGGAGGAGCGCATCATTCAATTTAAGGAGATGCTTAAGGAGCGAGGAGTGGCACCATTCTCAAAGTGGGAGAAAGAATTGCCGAAGATAGTATTTGATCCACGTTTTAAGGCTATCCCAAGTTATTCTGCCAGGAGATCCTTGTTTGAACATTATGTTAAAACTCGTGCAGAAGAAGAACGCAAAGAAAAACGTGCTGCTCAGAAGGCTGCAATTGAGGGATTTAAGCAGTTACTGGATGAAGCCTCAGAGGATATTAATCACAGCACTGATTATCAAACTTTTCGAAAGAAATGGGGAAATGATCCACGGTTTGAGGCATTGGACCGCAAGGATCGGGAGCACCTATTGAGTGAAAGAGTGCTTCCTTTGAAGAAAGCTGCTGAAGAAAAAGCTCAAGCAATGCGTGCAGCTGCTGCTACCAGTTTTAAGTCAATGCTTAAAGAACGGGATATAACTTTCAACTCACGTTGGTCCAGGGTTAAAGAAAGTTTAAGAGATGACCCAAGATATAAATCTGTGAAACATGAGGATAGGGAAGTTTTGTTCAATGAGTATATATCTGAATTGAAAGCTGCTGAACATGCAGCAGAACGAGAGACCAAAGCTAAAAGGGAGGAGCAGGATAAACTGCGTGAAAGAGAACGGGAGCTGCGCAAAAGGAAGGAAAGAGAAGAGCAGGAAATGGAAAGGGTGCGACTAAAAATTCGAAGAAAGGAGGCAGTTACTTCTTTTCAAGCTTTACTTGTGGAGACTATCAAAGACCCTCTGGCATCATGGACAGAATCGAAGCCTAAATTAGAAAAGGATCCTCAAGGACGGGCAACTAATCCTGATCTTGATCCAGCTGACACAGAAAAGCTCTTTCGGGAACATATAAAGATGCTTCAGGAACGTTGTGCACACGACTTTAGAGTCCTCTTAGCTGAAGTCTTGACTACTGAAGCCGCATCTCAAGAAACTGACGATGGGAAAACAGTGCTTAATTCATGGTCTACAGCTAAACGTCTTTTAAAATCCGATCTAAGATATAACAAGGTTCCAAGAAAAGAAAGAGAAGCCTTATGGCGCCGGTATGCAGAGGATATGCTGCGGCGGCAAAAGTCATCTCATGATTCAAAGGAAGAAAAACATACAGATACTAAAGGAAGAAATTCTCTAGAATCCTCCAAACTTACATCGGAATCAGGGAGATCGCATGAGAGAAGATAA 2865 0.4471 MASPAWLPQEAQPPLSGETPLHAAAVSSTPNSSATPAPAPAAPFAYSVHQNANASGNSQQSSTHSVVKSNSAANPMAVQPPVPGISSHAAPSFSYNIPQSGVAFPSNQHSQSSTNMLASVAQDVSKASHPALAHSSISTMPPPSDPNYRPATSWMPTFPVHPVMPGTPVNPGPPGLSPAAPSTNTESSSAAVLRQNMPAIASDPNAPQKGLPYPPIPSMVAPPQGFWLQPPQMSGVLRPPFLQYPAPFPGPYPFPARGVTLPAVPVPDSQPPGVTPLGAASGTSASPTSSHQLRGTTGLQTEVISGHAVVDDKKLNAVVTQNEDAGTDQLDAWTAHKTETGVVYYYNALTRESTYNKPAGFKGEPHQVSAQPTPVSMVELPGTDWVLVSTSDGKKYYYNNQTKTSCWQIPNEVAELKKKQDGDVTKDNLMSVPNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSNVQSSSSALDLIKKKLQDSGTPVASASIPVPSVQTGSESNGSKASEPTPKGPQNDNNKDKQKDVNGDANVSDTSSDSEDEDSGPSKEERIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKQLLDEASEDINHSTDYQTFRKKWGNDPRFEALDRKDREHLLSERVLPLKKAAEEKAQAMRAAAATSFKSMLKERDITFNSRWSRVKESLRDDPRYKSVKHEDREVLFNEYISELKAAEHAAERETKAKREEQDKLRERERELRKRKEREEQEMERVRLKIRRKEAVTSFQALLVETIKDPLASWTESKPKLEKDPQGRATNPDLDPADTEKLFREHIKMLQERCAHDFRVLLAEVLTTEAASQETDDGKTVLNSWSTAKRLLKSDLRYNKVPRKEREALWRRYAEDMLRRQKSSHDSKEEKHTDTKGRNSLESSKLTSESGRSHERR. 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00641 954 FunFam Pre-mRNA-processing protein 40C 848 913 - -
Seca6g00641 954 ProSiteProfiles FF domain profile. 619 674 IPR002713 -
Seca6g00641 954 ProSiteProfiles WW/rsp5/WWP domain profile. 385 412 IPR001202 GO:0005515
Seca6g00641 954 FunFam Pre-mRNA-processing protein 40C 679 752 - -
Seca6g00641 954 PANTHER TRANSCRIPTION ELONGATION REGULATOR 1 57 949 IPR045148 GO:0003712|GO:0070063
Seca6g00641 954 SMART FF_2 789 846 IPR002713 -
Seca6g00641 954 SMART FF_2 687 740 IPR002713 -
Seca6g00641 954 SMART FF_2 619 674 IPR002713 -
Seca6g00641 954 SMART FF_2 552 606 IPR002713 -
Seca6g00641 954 MobiDBLite consensus disorder prediction 276 294 - -
Seca6g00641 954 ProSiteProfiles WW/rsp5/WWP domain profile. 327 360 IPR001202 GO:0005515
Seca6g00641 954 MobiDBLite consensus disorder prediction 487 518 - -
Seca6g00641 954 ProSiteProfiles FF domain profile. 789 846 IPR002713 -
Seca6g00641 954 SUPERFAMILY WW domain 332 362 IPR036020 GO:0005515
Seca6g00641 954 ProSitePatterns WW/rsp5/WWP domain signature. 333 358 IPR001202 GO:0005515
Seca6g00641 954 ProSiteProfiles FF domain profile. 552 606 IPR002713 -
Seca6g00641 954 FunFam Pre-mRNA-processing protein 40C 786 846 - -
Seca6g00641 954 Gene3D FF domain 847 913 IPR036517 -
Seca6g00641 954 Gene3D FF domain 786 846 IPR036517 -
Seca6g00641 954 ProSiteProfiles FF domain profile. 687 740 IPR002713 -
Seca6g00641 954 SUPERFAMILY FF domain 782 851 IPR036517 -
Seca6g00641 954 MobiDBLite consensus disorder prediction 747 778 - -
Seca6g00641 954 CDD WW 383 412 IPR001202 GO:0005515
Seca6g00641 954 Gene3D FF domain 550 614 IPR036517 -
Seca6g00641 954 MobiDBLite consensus disorder prediction 915 936 - -
Seca6g00641 954 Gene3D - 370 427 - -
Seca6g00641 954 Pfam FF domain 792 843 IPR002713 -
Seca6g00641 954 Pfam FF domain 692 737 IPR002713 -
Seca6g00641 954 Pfam FF domain 622 668 IPR002713 -
Seca6g00641 954 Pfam FF domain 558 603 IPR002713 -
Seca6g00641 954 CDD WW 333 358 IPR001202 GO:0005515
Seca6g00641 954 SUPERFAMILY FF domain 843 919 IPR036517 -
Seca6g00641 954 Coils Coil 738 793 - -
Seca6g00641 954 FunFam pre-mRNA-processing protein 40C isoform X1 537 614 - -
Seca6g00641 954 MobiDBLite consensus disorder prediction 48 76 - -
Seca6g00641 954 MobiDBLite consensus disorder prediction 267 294 - -
Seca6g00641 954 MobiDBLite consensus disorder prediction 915 954 - -
Seca6g00641 954 SUPERFAMILY FF domain 547 612 IPR036517 -
Seca6g00641 954 SUPERFAMILY WW domain 384 416 IPR036020 GO:0005515
Seca6g00641 954 Gene3D - 329 369 - -
Seca6g00641 954 Gene3D FF domain 615 675 IPR036517 -
Seca6g00641 954 Gene3D FF domain 676 752 IPR036517 -
Seca6g00641 954 MobiDBLite consensus disorder prediction 1 85 - -
Seca6g00641 954 ProSitePatterns WW/rsp5/WWP domain signature. 385 410 IPR001202 GO:0005515
Seca6g00641 954 SMART ww_5 380 412 IPR001202 GO:0005515
Seca6g00641 954 SMART ww_5 328 360 IPR001202 GO:0005515
Seca6g00641 954 Pfam WW domain 332 358 IPR001202 GO:0005515
Seca6g00641 954 SUPERFAMILY FF domain 682 744 IPR036517 -
Seca6g00641 954 MobiDBLite consensus disorder prediction 812 834 - -
Seca6g00641 954 FunFam Pre-mRNA-processing protein 40C isoform C 615 678 - -
Seca6g00641 954 SUPERFAMILY FF domain 611 680 IPR036517 -
Seca6g00641 954 MobiDBLite consensus disorder prediction 487 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00641 Seca-Chr6 19411343 19428343 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00641 K12824 - gmx:100815386 1439.09